Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0526
         (848 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55307| Best HMM Match : HEAT (HMM E-Value=2.4e-11)                  29   3.6  
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)                29   3.6  
SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)              29   4.8  
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_48020| Best HMM Match : GATA (HMM E-Value=2.6)                      29   6.3  
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      29   6.3  
SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)                29   6.3  

>SB_55307| Best HMM Match : HEAT (HMM E-Value=2.4e-11)
          Length = 1552

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
 Frame = +3

Query: 129 ILRQSLQGFNRIHTHRHLIRQVHLFP-HHLRAIVHMVLLLHKQLCTKLRSHKHYNTTSYN 305
           ++ Q L    RI    H +    L   H LR + H +L+L  Q C   R+ K+  +T   
Sbjct: 479 LVEQLLTKTYRIEHCYHGLSSAQLLQVHELRLLAHALLILSSQRC-DTRTEKNLGSTLQV 537

Query: 306 HSRSLPRMSSW-HFRRRFHVPRYFMCHPFLS 395
               L R+  +  F RR   P    C   +S
Sbjct: 538 WQSFLSRVKHFSSFLRRCGAPMDDFCESIMS 568


>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
          Length = 237

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 162 IHTHRHLIRQVHLFPHHLRAIVHMVLLLHKQLCTKLRSHKHYNTTSYNH 308
           IH HRH     H   HH   I+ ++   H+Q   + R H H++   ++H
Sbjct: 166 IHRHRHH----HHHHHHPSTIIIILRHRHRQHYNRHRRHHHHHRHRHHH 210


>SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)
          Length = 1290

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 407  SIPNGKKRMAHKIPRHVKSSSKMPTRHAGQ 318
            S P G K   H I R  ++SS  PT H GQ
Sbjct: 989  SHPPGHKGQVHSIHRAQRASSSHPTGHKGQ 1018



 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 404  IPN-GKKRMAHKIPRHVKSSSKMPTRHAGQAPTV 306
            IP+ G K   H IPR  ++SS  P  H GQ  ++
Sbjct: 968  IPSPGHKGQVHPIPRAQRASSSHPPGHKGQVHSI 1001


>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
 Frame = +3

Query: 282 HYNTTSYNHSRSLPRMSSWHF--RRRFHVPRYF---MCHPFLSVRNTVLPCLKKQKM 437
           H+ T     +RSLP   SW      R HVPR +     H F  V  + LPC   Q +
Sbjct: 434 HFRTHGPGVTRSLPHTCSWALPAHYRIHVPRRYPLTTVHMFPGVTRS-LPCTCSQAL 489


>SB_48020| Best HMM Match : GATA (HMM E-Value=2.6)
          Length = 173

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 19/74 (25%), Positives = 32/74 (43%)
 Frame = +3

Query: 213 LRAIVHMVLLLHKQLCTKLRSHKHYNTTSYNHSRSLPRMSSWHFRRRFHVPRYFMCHPFL 392
           L+A+ H +  +    C +       ++TS  + RS  R+    +RRR H        P  
Sbjct: 23  LQALQHNIGTITPAKCAQCTGTSTLSSTSTLNRRSAERLEI--YRRRRHHSTLVQDSPLT 80

Query: 393 SVRNTVLPCLKKQK 434
           SV+   L CL+  +
Sbjct: 81  SVKKCSLKCLRNHQ 94


>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +1

Query: 316 ACPACRVGILEDDFTCLGILCAILFFPLGILCCLALKNRRCSNC 447
           AC +CRV        C    C ++ +   + CC    + +CS+C
Sbjct: 233 ACCSCRVVCYSCRVACCS--CRVVCYSCRVACCSCRVHMKCSSC 274


>SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)
          Length = 620

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +3

Query: 177 HLIRQVHL-FPHHLRAIVHMVLLLHKQLCTKL 269
           HL   +HL F  HLR ++H+ LLLH +L T++
Sbjct: 318 HLRLLLHLRFLLHLRLLLHLRLLLHFRLFTRV 349


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,840,968
Number of Sequences: 59808
Number of extensions: 499954
Number of successful extensions: 1226
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)