Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0526
         (848 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54238-6|CAA90999.2|  119|Caenorhabditis elegans Hypothetical pr...    42   4e-04
AC006610-4|AAK85450.1|  246|Caenorhabditis elegans Hypothetical ...    29   5.5  
Z50795-3|CAA90664.1|  200|Caenorhabditis elegans Hypothetical pr...    28   7.3  
L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying defe...    28   9.6  

>Z54238-6|CAA90999.2|  119|Caenorhabditis elegans Hypothetical
           protein T28C6.8 protein.
          Length = 119

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +1

Query: 316 ACPACRVGILEDDFTCLGILCAILFFPLGILCCLALKNRRCSNC 447
           +CPAC    ++  F+   IL AI  FP GI CC+  K   C+ C
Sbjct: 10  SCPACTQKKVKSRFSWRAILYAIFCFPCGIYCCMKRKTYYCTQC 53


>AC006610-4|AAK85450.1|  246|Caenorhabditis elegans Hypothetical
           protein C30F12.4 protein.
          Length = 246

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
 Frame = +1

Query: 310 VGA--CPACRVGIL--EDD------FTCLGILCAILFFPLGILCCLALKNRRCSNCGAMF 459
           VGA  CP CR GI+  + D        CL + C  L   L ++C        C  CG  +
Sbjct: 170 VGALVCPKCRKGIIMRKQDRLRKKILMCLAVCCCPLTCCLPLICICCNYVDACGACGKKY 229

Query: 460 G 462
           G
Sbjct: 230 G 230


>Z50795-3|CAA90664.1|  200|Caenorhabditis elegans Hypothetical
           protein R166.3 protein.
          Length = 200

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +3

Query: 147 QGFNRIHTHRHLIRQVHLFPHHLRAIVHMVLLLHKQLCTKLRSHKHYNTTSYNHSRSLPR 326
           QG+N + T  HLIR+     H   A+   + ++  Q    +  +K Y     +H   LPR
Sbjct: 141 QGWNHVETIDHLIRKSGYGGHINDALRSALRIVRFQSSKLVLDYKDYVNYKQSHGLPLPR 200


>L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying
           defective protein 45 protein.
          Length = 1076

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 117 NPRRILRQSLQGFN--RIHTHRHLIRQVHLFPHHLRAIVHMVLLLHKQLCTKLR 272
           +P ++LR+  +  +  R  T R L +Q   F HH+RA+ H+  L  ++    +R
Sbjct: 676 DPEQVLREQRERLDKERAETQRRLQQQEKNFDHHVRAL-HLEELNERRAVMNMR 728


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,100,831
Number of Sequences: 27780
Number of extensions: 375881
Number of successful extensions: 1023
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)