Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0526
         (848 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54710.1 68416.m06053 expressed protein                             30   1.7  
At3g20410.1 68416.m02585 calmodulin-domain protein kinase isofor...    30   2.2  
At2g43800.1 68415.m05445 formin homology 2 domain-containing pro...    29   3.9  
At1g69350.1 68414.m07958 pentatricopeptide (PPR) repeat-containi...    28   9.0  
At1g55325.1 68414.m06320 expressed protein                             28   9.0  
At1g54575.1 68414.m06224 expressed protein                             28   9.0  

>At3g54710.1 68416.m06053 expressed protein
          Length = 486

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
 Frame = +3

Query: 156 NRIHTHRHLIRQVHLFPHHLRAIVHMVLLLHKQLCTKLRSHKHYNTTSYNHSRSLPRMSS 335
           NRI ++ HL +  H++P  +  +  ++  +    C K R H   NT +     ++     
Sbjct: 88  NRIFSYDHLAQMKHIYPEAIE-LKRVLKFVEDTCCMKPRLHIKLNTDAIVVEDTICGTKY 146

Query: 336 WHFRRRFH--VPRYFMCHPFLSVRNTVLP 416
              R+ FH  +  +   HP   +   +LP
Sbjct: 147 MELRKVFHSKLVDFRKAHPKDEIPKELLP 175


>At3g20410.1 68416.m02585 calmodulin-domain protein kinase isoform 9
           (CPK9) identical to calmodulin-domain protein kinase
           CDPK isoform 9 [Arabidopsis thaliana]
           gi|1399265|gb|AAB03242
          Length = 541

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = +2

Query: 95  EKP-TVTEQPPPY-SAAVPPGLQPHT 166
           EKP +V  QPPP+ +AA  PGL P T
Sbjct: 47  EKPGSVNSQPPPWRAAAAAPGLSPKT 72


>At2g43800.1 68415.m05445 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 894

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
 Frame = +2

Query: 101 PTVTEQPPPYSAAV---PPGLQPHTY 169
           P VT  PPPY   V   PP   PHT+
Sbjct: 36  PVVTAAPPPYQPPVSSQPPSPSPHTH 61


>At1g69350.1 68414.m07958 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535: PPR repeat
          Length = 787

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 369 TEAREIVF*NANSTCGASSDCDYSWWYYNVCGS 271
           T+  E+VF N  S CG S   +   +Y+N+  S
Sbjct: 601 TKPNEVVFMNVLSACGHSGSVEEGKYYFNLMKS 633


>At1g55325.1 68414.m06320 expressed protein
          Length = 1921

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = -1

Query: 452  APQFEHLLFFKARQHSIPNGKKRMAHKIPRHVKSSSKMPTRHAGQAPTVIIAGGI 288
            +P F  L+  K    S+ N  +R++  +P     SS +P+R +     +    GI
Sbjct: 1351 SPSFNELVILKDTAFSVYNKARRISRGMPNDAFFSSSLPSRSSSALTPMNSISGI 1405


>At1g54575.1 68414.m06224 expressed protein
          Length = 102

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -1

Query: 419 ARQHSIPNGKKRMAHKIPR--HVKSSSKMPTRHAGQAPTVIIAGG 291
           +R++   + +K    KIP+  H  S  K+  +   + PT+I+AGG
Sbjct: 34  SREYEGESKQKYTTKKIPKWKHNDSERKIGQKQNNETPTMIVAGG 78


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,865,885
Number of Sequences: 28952
Number of extensions: 342560
Number of successful extensions: 1005
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)