Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0525
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc...    90   3e-19
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.7  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    27   2.7  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   8.4  

>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 240

 Score = 90.2 bits (214), Expect = 3e-19
 Identities = 40/81 (49%), Positives = 59/81 (72%)
 Frame = +2

Query: 260 SNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRESVNLAQVRSF 439
           SNIL+D++TL L S+VV   C  L E E+L  AF +  AFDE  +LGYR++V+L Q++++
Sbjct: 74  SNILQDIDTLHLLSQVVTSICSSLEEREILEYAFEIFTAFDEATSLGYRDNVSLTQIKTY 133

Query: 440 VEMDSHEEKIYQAVRQTQERE 502
           +EM+SHEEKI + V + +E E
Sbjct: 134 LEMESHEEKIQEIVSRNKEIE 154



 Score = 85.0 bits (201), Expect = 1e-17
 Identities = 36/70 (51%), Positives = 58/70 (82%)
 Frame = +3

Query: 42  MVLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVYQP 221
           MV++A ++  + GKA++SRQF EM++ R+E LL++FP L++   Q+T VE+++VR+VYQP
Sbjct: 1   MVVLAVSIVNRGGKAIISRQFREMSRVRVESLLSSFPALVSEKSQNTTVESDNVRFVYQP 60

Query: 222 LDKLYMLLIT 251
           LD+LY++LIT
Sbjct: 61  LDELYIVLIT 70


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 20/60 (33%), Positives = 33/60 (55%)
 Frame = +3

Query: 102 FVEMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVYQPLDKLYMLLITTRLVTSWKIW 281
           F +M KA I   L AF +LM    +H  ++ E +    Q LDK+++ L++ +   S K+W
Sbjct: 276 FSKMEKAEIFLRLRAFFQLM----EH--IDNERITPSEQFLDKVFISLLSAKNSCSLKMW 329


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 535 CSVRDWRRPNVASRRAHRCPSAVAL 609
           C  ++WRRP   +  A +CPS +A+
Sbjct: 189 CGRQNWRRPVNFASHAKQCPSFLAM 213


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 181  VCCRPPVISLGKAASRPSMRAFVISTNW 98
            +CC P  +++ +   +PS R+F     W
Sbjct: 2128 LCCDPSRLNIEQELQKPSGRSFACKKRW 2155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,551
Number of Sequences: 5004
Number of extensions: 52319
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)