Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0525
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)             138   4e-33
SB_13062| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)                      29   3.9  
SB_24194| Best HMM Match : RyR (HMM E-Value=5)                         29   3.9  
SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)                 28   6.7  
SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1378

 Score =  138 bits (334), Expect = 4e-33
 Identities = 64/83 (77%), Positives = 74/83 (89%)
 Frame = +2

Query: 254 KASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRESVNLAQVR 433
           K SNILEDLETLRLFSRV+PEYC  + E+E+   AF L+FAFDEIVALGYRE+VNLAQ+R
Sbjct: 543 KHSNILEDLETLRLFSRVIPEYCRAMEESEIGEHAFELIFAFDEIVALGYRENVNLAQIR 602

Query: 434 SFVEMDSHEEKIYQAVRQTQERE 502
           +F EMDSHEEK++QAVRQTQERE
Sbjct: 603 TFTEMDSHEEKVFQAVRQTQERE 625



 Score =  124 bits (298), Expect = 1e-28
 Identities = 58/74 (78%), Positives = 69/74 (93%), Gaps = 3/74 (4%)
 Frame = +3

Query: 45  VLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPKLMTGG---RQHTFVETESVRYVY 215
           VL+AA +CTK+GKA++SRQFVEMT++RIEGLL+AFPKLMT G   +QHTFVETESVRYVY
Sbjct: 470 VLLAAAICTKNGKAIISRQFVEMTRSRIEGLLSAFPKLMTSGSSVKQHTFVETESVRYVY 529

Query: 216 QPLDKLYMLLITTR 257
           QPL+KLYMLLITT+
Sbjct: 530 QPLEKLYMLLITTK 543


>SB_13062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 96  RQFVEMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVYQPLDKLYML 242
           R+ +E  K R+E LL+  PK++     H   ET+S   ++  +D+L  L
Sbjct: 33  RRMLEGLKNRLEALLS--PKIVAAFNNHCLDETKSYVKIFTAIDRLDQL 79


>SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)
          Length = 1691

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 718  RSFMAERPTVRVSLAXVVXIFSAIDSDGDDEDIVELPKPL 599
            RSF+   P ++ ++  +    S  DSD DD+D++ L  PL
Sbjct: 1107 RSFIMNTPDLKTNVKQIYGDLS--DSDFDDDDVILLESPL 1144


>SB_24194| Best HMM Match : RyR (HMM E-Value=5)
          Length = 211

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 451 LSRGKDLSSRKADPRTRGSDRMRERLRXCSVRDWRRPNVASRRAHR 588
           + R   + SRK   + RG ++ + R   C +RDW++     R A +
Sbjct: 149 IERAHRVESRK---KARGDEQTKPRTIVCKLRDWKQREAVIREARK 191


>SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1207

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -2

Query: 502 LAFLGLPYGLINLFLVRVHFNKRTDL 425
           L F G+PY ++N++LV V + + TD+
Sbjct: 103 LVFYGVPYLVVNMWLVIVTYLQHTDI 128


>SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1182

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -3

Query: 420 RLTLSLYPRATISSKANSKLKAWFKTSVSVSCTQYSGTTLLKSLNV 283
           +LTL+L     + S +N KL++  K SVS+S    S  +  K L V
Sbjct: 605 KLTLNLEKTKCMLSGSNRKLESKIKLSVSISNYNVSNVSNFKYLGV 650


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,570,652
Number of Sequences: 59808
Number of extensions: 418570
Number of successful extensions: 3015
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3014
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)