Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0525
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21309-2|AAN73882.1|  515|Caenorhabditis elegans Hypothetical pr...   120   1e-27
AF099001-8|AAP13778.1|  435|Caenorhabditis elegans Dumpy : short...    29   3.4  
AF099001-7|AAP13777.1|  441|Caenorhabditis elegans Dumpy : short...    29   3.4  
AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin, mu/m...    28   5.9  
AL132895-1|CAC14399.1|  601|Caenorhabditis elegans Hypothetical ...    28   7.9  
AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom...    28   7.9  

>U21309-2|AAN73882.1|  515|Caenorhabditis elegans Hypothetical
           protein C13B9.3 protein.
          Length = 515

 Score =  120 bits (289), Expect = 1e-27
 Identities = 58/111 (52%), Positives = 77/111 (69%)
 Frame = +2

Query: 167 RTAAYICRNRVRQICLPATRQVVYVTDHDKASNILEDLETLRLFSRVVPEYCVQLTETEV 346
           R   ++  + VR +  P    +  V    K SNILEDLETLRLF RV+PEYC    E E+
Sbjct: 50  RQHTFVETDSVRYVYHPLDN-IYLVLVTTKNSNILEDLETLRLFVRVIPEYCRSNEEKEI 108

Query: 347 LNQAFNLLFAFDEIVALGYRESVNLAQVRSFVEMDSHEEKIYQAVRQTQER 499
           L   F+L+FAFDE+V LGYRESVNLAQ+R+F EMDSHEE+++  +++ QE+
Sbjct: 109 LAHDFDLIFAFDEVVTLGYRESVNLAQIRTFTEMDSHEERVFMQIKEAQEK 159



 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 46/78 (58%), Positives = 62/78 (79%), Gaps = 6/78 (7%)
 Frame = +3

Query: 42  MVLIAATVCTKSGKALVSRQFV-EMTKARIEGLLAAFPKLM-----TGGRQHTFVETESV 203
           MVLIAA + +K+GK LV+RQFV +M ++R+EGL+ AFPKL+        RQHTFVET+SV
Sbjct: 1   MVLIAACILSKTGKLLVARQFVNDMMRSRLEGLVDAFPKLIGNEKEAATRQHTFVETDSV 60

Query: 204 RYVYQPLDKLYMLLITTR 257
           RYVY PLD +Y++L+TT+
Sbjct: 61  RYVYHPLDNIYLVLVTTK 78


>AF099001-8|AAP13778.1|  435|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 23, isoform b protein.
          Length = 435

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 28/106 (26%), Positives = 44/106 (41%)
 Frame = +2

Query: 125 HRRSTGGLP*TNDRRTAAYICRNRVRQICLPATRQVVYVTDHDKASNILEDLETLRLFSR 304
           H R     P TN  RT+ +  +     IC   TRQ V         N     E L+ F+ 
Sbjct: 38  HARQQVRSPVTNMARTSFFHVKRGNVWICA-VTRQNV---------NAAMVFEFLKRFAD 87

Query: 305 VVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRESVNLAQVRSFV 442
            +  Y  +L E  V N    +    DEI+  GY ++ +   +++F+
Sbjct: 88  TMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQNTDPGVLKTFI 133


>AF099001-7|AAP13777.1|  441|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 23, isoform a protein.
          Length = 441

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 28/106 (26%), Positives = 44/106 (41%)
 Frame = +2

Query: 125 HRRSTGGLP*TNDRRTAAYICRNRVRQICLPATRQVVYVTDHDKASNILEDLETLRLFSR 304
           H R     P TN  RT+ +  +     IC   TRQ V         N     E L+ F+ 
Sbjct: 38  HARQQVRSPVTNMARTSFFHVKRGNVWICA-VTRQNV---------NAAMVFEFLKRFAD 87

Query: 305 VVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRESVNLAQVRSFV 442
            +  Y  +L E  V N    +    DEI+  GY ++ +   +++F+
Sbjct: 88  TMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQNTDPGVLKTFI 133


>AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin,
           mu/medium chain (clathrinassociated complex) protein 1
           protein.
          Length = 426

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = +2

Query: 230 VVYVTDHDKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRE 409
           V  VT   K +N++  L  L     V  EY   L E  V +    +   FDE++  GY +
Sbjct: 65  VYLVTISKKNTNVILVLSALYKIVEVFCEYFKTLEEEAVRDNFVIIYELFDEMLDFGYPQ 124

Query: 410 SVNLAQVRSFV 442
           +     ++ F+
Sbjct: 125 TTESKILQEFI 135


>AL132895-1|CAC14399.1|  601|Caenorhabditis elegans Hypothetical
           protein Y59A8A.1 protein.
          Length = 601

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +2

Query: 281 ETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRESVNLAQVRSFVEMDSHE 460
           E +RL+SR + +YC QL  +  +N   N +         G  ++V     RS  + D  E
Sbjct: 216 EAIRLYSRGIRDYCTQLKHS--INMWINWMEVAICANDWGKLDTVTNTAYRSLKDADDAE 273

Query: 461 EKIYQAVRQTQER 499
           +   Q+ +   +R
Sbjct: 274 KNSQQSQQAPPQR 286


>AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts
           homolog) family protein 6 protein.
          Length = 1186

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -2

Query: 655 SAIDSDGDDEDIVELPKPLPKDICERGGWPRLAASNLSRCNXLGVRACGR 506
           S  D +  D ++VE P+  P+   +RGG  +++   L+      V+  G+
Sbjct: 107 SEADENASDCEVVESPESTPQSTPKRGGKKKISKPLLAENTPKSVKMAGK 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,653,527
Number of Sequences: 27780
Number of extensions: 307586
Number of successful extensions: 980
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)