Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0523
(767 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 29 0.73
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 28 1.7
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 28 1.7
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 28 1.7
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 28 1.7
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 3.9
SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom... 27 3.9
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb... 26 5.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 6.8
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 26 6.8
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 29.1 bits (62), Expect = 0.73
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 652 QWFRATCIC--FDRYTLRQTCSSEMTAVLTGFLLYSSTLASKTPSLEATL 509
Q F ++CIC Y L +TC+ + LY++T+ PS+E L
Sbjct: 425 QAFLSSCICPVLPGYGLTETCAGSFVLSPEQWHLYANTVGFPIPSIEFKL 474
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -2
Query: 178 ISHCKCTYR*SADCVLRCREYCVHYVISTVTTAIYTIYKFCCSLNFVKIERIVSRH 11
+ C Y S++C+ + Y V+ +I + T Y ++ C+L F I R V ++
Sbjct: 145 LQECIEEYVFSSECIKYRQFYSVYEIIDFLRTNFYRLFVIYCALGF-GITRTVPKY 199
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -2
Query: 178 ISHCKCTYR*SADCVLRCREYCVHYVISTVTTAIYTIYKFCCSLNFVKIERIVSRH 11
+ C Y S++C+ + Y V+ +I + T Y ++ C+L F I R V ++
Sbjct: 145 LQECIEEYVFSSECIKYRQFYSVYEIIDFLRTNFYRLFVIYCALGF-GITRTVPKY 199
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -2
Query: 178 ISHCKCTYR*SADCVLRCREYCVHYVISTVTTAIYTIYKFCCSLNFVKIERIVSRH 11
+ C Y S++C+ + Y V+ +I + T Y ++ C+L F I R V ++
Sbjct: 117 LQECIEEYVFSSECIKYRQFYSVYEIIDFLRTNFYRLFVIYCALGF-GITRTVPKY 171
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -2
Query: 178 ISHCKCTYR*SADCVLRCREYCVHYVISTVTTAIYTIYKFCCSLNFVKIERIVSRH 11
+ C Y S++C+ + Y V+ +I + T Y ++ C+L F I R V ++
Sbjct: 145 LQECIEEYVFSSECIKYRQFYSVYEIIDFLRTNFYRLFVIYCALGF-GITRTVPKY 199
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +1
Query: 364 FLARPILIRVSLQYRFSAIAVHPQVQAMNGNKYDVLYIGTDDGRVIKAVMLPLTKAFLTR 543
FL+R + +SL + H +Q ++G Y L +GT V + + +TR
Sbjct: 166 FLSRSVTYSISLSLTMNKHQGHSLLQTVSGLNYHTLSVGTGLSYVSLIIFDLPSNLLMTR 225
Query: 544 A 546
A
Sbjct: 226 A 226
>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 287
Score = 26.6 bits (56), Expect = 3.9
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +1
Query: 421 AVHPQVQAMNGN---KYDVLYIGTDDGRVIKAVMLPLTKAFLTRA*MSIAKIL*GPQSF 588
AV P + NG YD+L G DD + + V++P + ++ ++ KIL PQ+F
Sbjct: 65 AVLPIENSTNGAVIPAYDLLK-GRDDIQAVGEVLVPAHHCIIGKSLENVQKILSHPQAF 122
>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 463 DVLYIGTDDGRVIKAV 510
DVL IG+ DGRVI+A+
Sbjct: 11 DVLVIGSADGRVIEAI 26
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 585 ISEEQVCLKVYLSKQMHVALNH*KIDSGFRVILLKL*HY 701
+ E Q+CLK LS H A +I G +LL + HY
Sbjct: 3289 VGEFQLCLKCLLSFSQHAA--SLRICHGIDAMLLNIYHY 3325
>SPAC17G8.13c |mst2||histone acetyltransferase
Mst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -3
Query: 351 FIHQRMGLYEVNDFIGKSPTVLHARTGPGLRYFSFLTGSQFEFQFSCPLKSP 196
F+H +M Y+V F+ T + + YFS S ++ SC L P
Sbjct: 194 FLHSKMLYYDVEPFLFYVLTEFDGQECKVIGYFSKEKRSASDYNVSCILTLP 245
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,215,697
Number of Sequences: 5004
Number of extensions: 68150
Number of successful extensions: 158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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