Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0523
         (767 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13005| Best HMM Match : PSI (HMM E-Value=2.9e-11)                   41   0.001
SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10)                 31   1.4  
SB_45596| Best HMM Match : rve (HMM E-Value=1.8e-07)                   29   5.5  
SB_9975| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-38)                  28   7.2  

>SB_13005| Best HMM Match : PSI (HMM E-Value=2.9e-11)
          Length = 829

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
 Frame = +1

Query: 289 DSRTLSDEVVNFVKAHPLMDKAVPSFLARPILIRVSLQYRFSAIAVHPQVQAMNGNKYDV 468
           D++  S EV  F K HP++  ++     +P+ I+  +++    +     V         V
Sbjct: 240 DTKRYSVEVFKFAKEHPILSDSIKPTDKKPLFIKQGVRFTQMVVDKVSIVAGSTIKTVPV 299

Query: 469 LYIGTDDGRVIKAVMLPLTK--AFLTRA*MSIAKIL*GPQSFLKNRSASRCTYQNRCT 636
           +++GTD+G V K    P ++  + L +  +    +  G  S +       C +   CT
Sbjct: 300 MFLGTDNGTVYKVFQNPTSQEVSILEQRDVMKDAVFIGGHSSVIRMPTHHCAHYTSCT 357



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +2

Query: 86  GNSRNDIMYAVFTTPQNAIGGSAVCAFAMRDIIDAF 193
           G+    I++ VFTTP+N + GSAVC + M+ I   F
Sbjct: 162 GDGPEAIIFGVFTTPKNGLAGSAVCLYPMKTIQSVF 197



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 704 HCGNVXSCRECVSLQDPHC 760
           HC +  SC  CV  +DP+C
Sbjct: 349 HCAHYTSCTTCVLTRDPYC 367


>SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10)
          Length = 718

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 134 NAIGGSAVCAFAMRDIIDAFEGLFKGQENWNSNW 235
           N + GSA+CA+++ +I   F G +K  ++    W
Sbjct: 2   NGVAGSAICAYSLDEINRVFNGDYKYGDDKTGEW 35


>SB_45596| Best HMM Match : rve (HMM E-Value=1.8e-07)
          Length = 882

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/35 (34%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
 Frame = -2

Query: 256 FLFFNGQPI*VPIFL-SFEESLKSIYNISHCKCTY 155
           F++FNG P+  P F+ +FE ++K++ + ++ K +Y
Sbjct: 386 FVYFNGNPLDYPRFIKNFEVNVKAMSSDNNTKLSY 420


>SB_9975| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-38)
          Length = 1101

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 139 CVLRCREYCVHYVISTVTTAIYTIY 65
           C LRC  + + +   T TTA+Y +Y
Sbjct: 280 CGLRCSHFLITHAGETKTTAVYVLY 304


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,293,323
Number of Sequences: 59808
Number of extensions: 524225
Number of successful extensions: 1059
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)