Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0523
(767 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15667-1|AAA51021.1| 562|Caenorhabditis elegans CeSema protein. 89 4e-18
AL032653-1|CAA21714.1| 712|Caenorhabditis elegans Hypothetical ... 88 6e-18
AF216968-1|AAF60253.2| 658|Caenorhabditis elegans semaphorin-2a... 41 8e-04
AC025726-1|AAK73921.1| 658|Caenorhabditis elegans Male abnormal... 41 8e-04
AF106592-1|AAK21365.2| 654|Caenorhabditis elegans Semaphorin re... 32 0.52
U39993-2|AAK72059.1| 744|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z68336-5|CAA92740.3| 442|Caenorhabditis elegans Hypothetical pr... 29 3.6
AF026206-1|AAK39306.1| 260|Caenorhabditis elegans Hypothetical ... 29 4.8
Z81077-3|CAB03067.1| 527|Caenorhabditis elegans Hypothetical pr... 28 8.4
>U15667-1|AAA51021.1| 562|Caenorhabditis elegans CeSema protein.
Length = 562
Score = 88.6 bits (210), Expect = 4e-18
Identities = 47/138 (34%), Positives = 80/138 (57%), Gaps = 2/138 (1%)
Frame = +1
Query: 103 HNVRSIHDTAKRNRRISGMCICNERYYR--CF*GTLQRTRKLELKLAAR*KREIPQTRPG 276
H V ++ T + R+S +C + + R GT ++ + A + E+P+ RPG
Sbjct: 317 HVVYTVFSTPDSDVRMSAVCKFSMKKIREEFDNGTFKQQNNAQSMWMAFNRNEVPKPRPG 376
Query: 277 SCVEDSRTLSDEVVNFVKAHPLMDKAVPSFLARPILIRVSLQYRFSAIAVHPQVQAMNGN 456
SC DS L + V+F+ HPL+ + +PS +A P+L+ + + + I V P+V+A+ G+
Sbjct: 377 SCSPDSTKLPENTVSFILHHPLLHRPIPS-VAAPLLVEGADRADLTQITVLPRVRAVGGH 435
Query: 457 KYDVLYIGTDDGRVIKAV 510
YD+L+IGT DG+V+K V
Sbjct: 436 NYDILFIGTSDGKVLKVV 453
Score = 65.3 bits (152), Expect = 5e-11
Identities = 36/93 (38%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Frame = +2
Query: 2 NCSMP-GDYPFYFDEIQATTELINGIYGSGNSRNDIMYAVFTTPQNAIGGSAVCAFAMRD 178
N S+P G PFYF+E++A ++ + +GN+ N ++Y VF+TP + + SAVC F+M+
Sbjct: 288 NYSLPSGSSPFYFNELKAVSDPRH----AGNN-NHVVYTVFSTPDSDVRMSAVCKFSMKK 342
Query: 179 IIDAFE-GLFKGQENWNSNWLPVKKEKYLKPGP 274
I + F+ G FK Q N S W+ + + KP P
Sbjct: 343 IREEFDNGTFKQQNNAQSMWMAFNRNEVPKPRP 375
Score = 35.9 bits (79), Expect = 0.032
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 677 DIIKAVTLSHCGNVXSCRECVSLQDPHC 760
D I ++ + +C SC +CV LQDPHC
Sbjct: 490 DEIASLPVHNCAQQTSCSKCVQLQDPHC 517
>AL032653-1|CAA21714.1| 712|Caenorhabditis elegans Hypothetical
protein Y54E5B.1a protein.
Length = 712
Score = 88.2 bits (209), Expect = 6e-18
Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 2/138 (1%)
Frame = +1
Query: 103 HNVRSIHDTAKRNRRISGMCICNERYYR--CF*GTLQRTRKLELKLAAR*KREIPQTRPG 276
H V ++ T + R+S +C + + R GT + + A + E+P+ RPG
Sbjct: 314 HVVYTVFSTPDSDVRMSAVCKFSMKKIREEFDNGTFKHQNNAQSMWMAFNRNEVPKPRPG 373
Query: 277 SCVEDSRTLSDEVVNFVKAHPLMDKAVPSFLARPILIRVSLQYRFSAIAVHPQVQAMNGN 456
SC DS L + V+F+ HPL+ + +PS +A P+L+ + + + I V P+V+A+ G+
Sbjct: 374 SCSPDSTKLPENTVSFILHHPLLHRPIPS-VAAPLLVEGADRADLTQITVLPRVRAVGGH 432
Query: 457 KYDVLYIGTDDGRVIKAV 510
YD+L+IGT DG+V+K V
Sbjct: 433 NYDILFIGTSDGKVLKVV 450
Score = 72.5 bits (170), Expect = 3e-13
Identities = 38/93 (40%), Positives = 59/93 (63%), Gaps = 2/93 (2%)
Frame = +2
Query: 2 NCSMP-GDYPFYFDEIQATTELINGIYGSGNSRNDIMYAVFTTPQNAIGGSAVCAFAMRD 178
NCS+P G PFYF+E++A ++ I+ +GN+ N ++Y VF+TP + + SAVC F+M+
Sbjct: 285 NCSLPSGSSPFYFNELKAVSDPID----AGNN-NHVVYTVFSTPDSDVRMSAVCKFSMKK 339
Query: 179 IIDAFE-GLFKGQENWNSNWLPVKKEKYLKPGP 274
I + F+ G FK Q N S W+ + + KP P
Sbjct: 340 IREEFDNGTFKHQNNAQSMWMAFNRNEVPKPRP 372
Score = 37.5 bits (83), Expect = 0.010
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 677 DIIKAVTLSHCGNVXSCRECVSLQDPHCA 763
D I ++ + +C SC +CV LQDPHCA
Sbjct: 487 DEIASLPVHNCAQQTSCSKCVQLQDPHCA 515
>AF216968-1|AAF60253.2| 658|Caenorhabditis elegans semaphorin-2a
protein.
Length = 658
Score = 41.1 bits (92), Expect = 8e-04
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = +2
Query: 2 NCSMPGDYPFYFDEIQATTELINGIYGSGNSRNDIMYAVFTTPQNAIGGSAVCAFAMRDI 181
NCS+ ++PFYFD IQ+ + + G + YA F+T + A SA+C F + I
Sbjct: 275 NCSVSANFPFYFDHIQS----VKRVDKHGET---YFYATFSTSETAFTSSAICMFQLSSI 327
Score = 36.7 bits (81), Expect = 0.018
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +1
Query: 253 EIPQTRPGSCVEDSRTLSDEVVNFVKAHPLMDKAV 357
EIP RPG+C ++S ++SD ++F K H L+ ++
Sbjct: 351 EIPAHRPGTCSQNSHSISDTDLHFAKTHLLVSDSI 385
>AC025726-1|AAK73921.1| 658|Caenorhabditis elegans Male abnormal
protein 20, isoform a protein.
Length = 658
Score = 41.1 bits (92), Expect = 8e-04
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = +2
Query: 2 NCSMPGDYPFYFDEIQATTELINGIYGSGNSRNDIMYAVFTTPQNAIGGSAVCAFAMRDI 181
NCS+ ++PFYFD IQ+ + + G + YA F+T + A SA+C F + I
Sbjct: 275 NCSVSANFPFYFDHIQS----VKRVDKHGET---YFYATFSTSETAFTSSAICMFQLSSI 327
Score = 36.7 bits (81), Expect = 0.018
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +1
Query: 253 EIPQTRPGSCVEDSRTLSDEVVNFVKAHPLMDKAV 357
EIP RPG+C ++S ++SD ++F K H L+ ++
Sbjct: 351 EIPAHRPGTCSQNSHSISDTDLHFAKTHLLVSDSI 385
>AF106592-1|AAK21365.2| 654|Caenorhabditis elegans Semaphorin
related protein 2 protein.
Length = 654
Score = 31.9 bits (69), Expect = 0.52
Identities = 21/84 (25%), Positives = 41/84 (48%)
Frame = +1
Query: 262 QTRPGSCVEDSRTLSDEVVNFVKAHPLMDKAVPSFLARPILIRVSLQYRFSAIAVHPQVQ 441
++ P +C SR E ++ ++ PL+ + + A PI I RF + +
Sbjct: 336 ESTPDTC---SRANDIEELSRIRLKPLIKQKIS---ANPIYIFHGKD-RFVHVLAQEDTR 388
Query: 442 AMNGNKYDVLYIGTDDGRVIKAVM 513
++ YD+LY+ T+ G ++K V+
Sbjct: 389 DLSNRAYDILYVATNLGNILKIVV 412
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 680 IIKAVTLSHCGNVXSCRECVSLQDPHCA 763
++K T + C +C EC++ DPHCA
Sbjct: 456 VLKVPTAT-CHLASNCAECLAHGDPHCA 482
>U39993-2|AAK72059.1| 744|Caenorhabditis elegans Hypothetical
protein F47E1.2 protein.
Length = 744
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = -1
Query: 380 IGRAKNDGTALSIKGWAFTKLTTSSERVLLSSTQEPGLV*GISLF 246
IG+ ++ + +I GW F + ++E ++ ++T + L +SLF
Sbjct: 167 IGQGQSGNSTYTIDGWLFNEALVAAENLIANNTSQNTLRSSLSLF 211
>Z68336-5|CAA92740.3| 442|Caenorhabditis elegans Hypothetical
protein F22B3.8 protein.
Length = 442
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = +1
Query: 307 DEVVNFVKAHPLMDKAVPSFLARPILIRVSLQYRFSAIAVHPQVQAMNGNKYDVLYIG 480
DE++N+ K +P+ FL RPI+++ + R I + P + + + ++Y+G
Sbjct: 120 DELINYYKVNPICYHNTRVFLKRPIVLQ-DWELRAEGIDMTP--KKLGEGAFGIVYLG 174
>AF026206-1|AAK39306.1| 260|Caenorhabditis elegans Hypothetical
protein T28B4.2 protein.
Length = 260
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 496 LYHRQCRCTIHRICFHSLLELEDE 425
+Y R CRC I I FH L L +E
Sbjct: 171 MYFRWCRCHIAVIVFHKFLNLVEE 194
>Z81077-3|CAB03067.1| 527|Caenorhabditis elegans Hypothetical
protein F36A2.2 protein.
Length = 527
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -2
Query: 478 RCTIHRICFHSLLELEDER 422
R + RIC HSLLE ED R
Sbjct: 329 RAHVFRICHHSLLEYEDLR 347
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,040,554
Number of Sequences: 27780
Number of extensions: 393180
Number of successful extensions: 889
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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