BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0523 (767 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g61340.1 68418.m07697 expressed protein 31 0.64 At3g06140.1 68416.m00705 zinc finger (C3HC4-type RING finger) fa... 28 6.0 At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM dom... 28 7.9 At1g20910.1 68414.m02618 ARID/BRIGHT DNA-binding domain-containi... 28 7.9 >At5g61340.1 68418.m07697 expressed protein Length = 326 Score = 31.5 bits (68), Expect = 0.64 Identities = 19/59 (32%), Positives = 28/59 (47%) Frame = -3 Query: 264 LRYFSFLTGSQFEFQFSCPLKSPSKASIISLIANAHTADPPIAFCGVVNTAYIMSFRLL 88 L+ L+ S F FS SKA +I L++N H+AD F + Y+ +F L Sbjct: 79 LKLSQTLSSSLFTLPFSLTFLLLSKAYVIKLLSNNHSADSSSVFYLRLLKTYVCNFFFL 137 >At3g06140.1 68416.m00705 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 Zinc finger, C3HC4 type (RING finger) Length = 359 Score = 28.3 bits (60), Expect = 6.0 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Frame = -3 Query: 300 SPTVLHARTGPGLRYFS-FLTGSQFEFQFSCPLKSPSKASIISLIANAHTADPP 142 SPT H + GPG ++ TG+ F L P + + L+ +A T P Sbjct: 181 SPTRFHFQKGPGQKFLQPSGTGTDLSFFVLDDLSKPLEEDVYPLVISAETIISP 234 >At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM domain-containing protein low similarity to GLUT4 vesicle protein [Rattus norvegicus] GI:4193489; contains Pfam profiles PF00168: C2 domain, PF02893: GRAM domain Length = 594 Score = 27.9 bits (59), Expect = 7.9 Identities = 11/34 (32%), Positives = 17/34 (50%) Frame = -3 Query: 303 KSPTVLHARTGPGLRYFSFLTGSQFEFQFSCPLK 202 + PT++H + GP F L E +SC L+ Sbjct: 219 QGPTIVHQKPGPLQTIFDLLPDEVVEHSYSCALE 252 >At1g20910.1 68414.m02618 ARID/BRIGHT DNA-binding domain-containing protein low similarity to Chain A, Human Mrf-2 Domain [Homo sapiens] GI:14278238; contains Pfam profile PF01388: ARID/BRIGHT DNA binding domain Length = 398 Score = 27.9 bits (59), Expect = 7.9 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = -1 Query: 377 GRAKNDGTALSIKGWAFTKLTTSSERVLLSSTQEPGLV 264 GRA+ D A +++GW +L S E V + ++ GL+ Sbjct: 228 GRARRDSAARAMQGWHAQRLVGSGE-VTAPAVKDKGLI 264 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,567,873 Number of Sequences: 28952 Number of extensions: 348082 Number of successful extensions: 866 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 842 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 866 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1721869952 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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