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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0523
         (767 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61340.1 68418.m07697 expressed protein                             31   0.64 
At3g06140.1 68416.m00705 zinc finger (C3HC4-type RING finger) fa...    28   6.0  
At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM dom...    28   7.9  
At1g20910.1 68414.m02618 ARID/BRIGHT DNA-binding domain-containi...    28   7.9  

>At5g61340.1 68418.m07697 expressed protein
          Length = 326

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = -3

Query: 264 LRYFSFLTGSQFEFQFSCPLKSPSKASIISLIANAHTADPPIAFCGVVNTAYIMSFRLL 88
           L+    L+ S F   FS      SKA +I L++N H+AD    F   +   Y+ +F  L
Sbjct: 79  LKLSQTLSSSLFTLPFSLTFLLLSKAYVIKLLSNNHSADSSSVFYLRLLKTYVCNFFFL 137


>At3g06140.1 68416.m00705 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 Zinc
           finger, C3HC4 type (RING finger)
          Length = 359

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -3

Query: 300 SPTVLHARTGPGLRYFS-FLTGSQFEFQFSCPLKSPSKASIISLIANAHTADPP 142
           SPT  H + GPG ++     TG+   F     L  P +  +  L+ +A T   P
Sbjct: 181 SPTRFHFQKGPGQKFLQPSGTGTDLSFFVLDDLSKPLEEDVYPLVISAETIISP 234


>At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM
           domain-containing protein low similarity to GLUT4
           vesicle protein [Rattus norvegicus] GI:4193489; contains
           Pfam profiles PF00168: C2 domain, PF02893: GRAM domain
          Length = 594

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 303 KSPTVLHARTGPGLRYFSFLTGSQFEFQFSCPLK 202
           + PT++H + GP    F  L     E  +SC L+
Sbjct: 219 QGPTIVHQKPGPLQTIFDLLPDEVVEHSYSCALE 252


>At1g20910.1 68414.m02618 ARID/BRIGHT DNA-binding domain-containing
           protein low similarity to Chain A, Human Mrf-2 Domain
           [Homo sapiens] GI:14278238; contains Pfam profile
           PF01388: ARID/BRIGHT DNA binding domain
          Length = 398

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 377 GRAKNDGTALSIKGWAFTKLTTSSERVLLSSTQEPGLV 264
           GRA+ D  A +++GW   +L  S E V   + ++ GL+
Sbjct: 228 GRARRDSAARAMQGWHAQRLVGSGE-VTAPAVKDKGLI 264


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,567,873
Number of Sequences: 28952
Number of extensions: 348082
Number of successful extensions: 866
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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