Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0521
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    31   0.13 
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    28   1.6  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   8.5  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    25   8.5  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    25   8.5  

>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +3

Query: 192 YPAIEDVVPTQWIDVSGSRGCSKNRLHMDRNPQ-HSRITDPSNPAGRRKEIDNVMKKAR 365
           YPA+ ++  + W  V  S  C+  +L MD NP     +    + + R+KE + ++++ R
Sbjct: 450 YPALFEISKSHWNRVIHSMVCNVLKLFMDINPSLFDEVDAEYSESRRKKEDEEIIREER 508


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 381 SWDRKLLEVEEKDPNRWRHTGYKQLYL 461
           S+D K + V      RWRH+ + Q YL
Sbjct: 125 SFDAKYVLVSVNKSQRWRHSSFAQYYL 151


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -2

Query: 499 LERRGEPEPDLLS 461
           LERRG+P+PD L+
Sbjct: 635 LERRGKPDPDFLT 647


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 336 EIDNVMKKARQSSPGSWDRKLLEVEEKDPNRWRHTGYKQ 452
           E+ +++ K   S P   + K  EVE+KD ++ R+   K+
Sbjct: 664 EVSHMLAKVEISKPSEEEDKKEEVEKKDGDKERNEEKKE 702


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 270 HMDRNPQHSRITDPSNPAGRRK-EIDNVMKKARQSSPGSWDRKLLEVEEKDPNRWRH 437
           H   +  HS   DPS+PA +++  + +  +K +   P   ++K   V     N+  H
Sbjct: 303 HHHHHHHHSHDDDPSSPAEKKQNHVPSPSEKIQDHVPSPSEKKQDRVPSPSNNKEDH 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,650,234
Number of Sequences: 5004
Number of extensions: 51377
Number of successful extensions: 180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)