Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0521
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45371| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.079
SB_25744| Best HMM Match : MFS_1 (HMM E-Value=9.7e-23)                 31   1.3  
SB_5232| Best HMM Match : UIM (HMM E-Value=2.2)                        31   1.3  
SB_6552| Best HMM Match : Glyco_transf_9 (HMM E-Value=1.9)             29   3.9  
SB_30403| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_46289| Best HMM Match : DUF1690 (HMM E-Value=0.32)                  28   9.0  
SB_22723| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_11213| Best HMM Match : RVT_1 (HMM E-Value=6.4e-38)                 28   9.0  

>SB_45371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 34.7 bits (76), Expect = 0.079
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 384 WDRKLLEVEEKDPNRWRHTGYKQLYLE 464
           W ++L E E    +RW H+GYK+LY E
Sbjct: 75  WMKQLTEFESSCTDRWGHSGYKELYPE 101


>SB_25744| Best HMM Match : MFS_1 (HMM E-Value=9.7e-23)
          Length = 403

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
 Frame = +3

Query: 213 VPTQWIDVSGSRGCSKNRLHMDRNPQH-SRITDPSNPAGRRKEIDNVMKKAR-QSSP 377
           +P+ ++ VSG  G S  R+ +DR P+   + TDP+ P     +  NV+K  R Q++P
Sbjct: 347 LPSAFLKVSGFAGSSA-RVSVDRRPKRIKKYTDPNEPVLVWAKDLNVLKSIRIQTNP 402


>SB_5232| Best HMM Match : UIM (HMM E-Value=2.2)
          Length = 167

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +3

Query: 231 DVSGSRGCSKNRLHMDRNPQHSRITDPSNPAGRRKEIDNVMKKARQSSPGSWD--RKLLE 404
           DVS     ++ +LH++ N         S P   ++++D +   +  S  G ++    LLE
Sbjct: 17  DVSNPSPSARRKLHIEFNTPKKSHGSASKPNSNKQKLDRLTPLSIASDKGDYNSSMNLLE 76

Query: 405 VEEKDPNRW 431
           + E+D  +W
Sbjct: 77  MCEEDQMQW 85


>SB_6552| Best HMM Match : Glyco_transf_9 (HMM E-Value=1.9)
          Length = 930

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = -3

Query: 501 TWNAGVSPSRISSPG--ITAYSQYVATCSGPFPPLPAAS--CPSCRAKTASPSSSRYRS 337
           +WN G    + +SP   +   S   ATCSGP P +  AS      RA+++SPS+   +S
Sbjct: 294 SWNRG----KCTSPTFFVCQLSHRCATCSGPHPQVECASRGRKPNRARSSSPSTKPPKS 348


>SB_30403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 447 YSQYVA-TCSGPFPPLPAASCPSCRAKTASPSSS 349
           +  YVA TCSGP    PA   P CR ++ +P  S
Sbjct: 24  FEHYVAETCSGPVVLCPA---PECRGRSFTPQRS 54


>SB_46289| Best HMM Match : DUF1690 (HMM E-Value=0.32)
          Length = 947

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = +3

Query: 222 QWIDVSGSRGCSKNRLHMDRNPQHSRITDPSNPAGRRKEIDNVMKKARQSSPGSW 386
           Q I++ G+ G   ++  +DRN   S+  D ++ +    E+DN + K  Q+  G++
Sbjct: 531 QAINMKGADGRIHHKEILDRNGGWSKADDVTDDSKETSEMDNDILKDAQNEKGNF 585


>SB_22723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 288 QHSRITDPSNPAGRRKEIDNVMKKARQSSPG 380
           Q+ R+TDP++   R      V+   R S PG
Sbjct: 71  QYKRLTDPTHAQSRHSNDSRVLPTRRNSEPG 101


>SB_11213| Best HMM Match : RVT_1 (HMM E-Value=6.4e-38)
          Length = 510

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = -2

Query: 229 IHCVGTTSSIAGYYEITEQGLQTRATRRVGAKPQGHTAAAHDDRRCSCKTPKLFTG 62
           IHC+  + S  GYY +   G+ T      GA P  +   ++ D     K   ++ G
Sbjct: 399 IHCIDGSRSHPGYYALFITGMFTIG---AGASPLWNLGTSYMDENVKAKAVSMYIG 451


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,283,566
Number of Sequences: 59808
Number of extensions: 447793
Number of successful extensions: 1364
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)