Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0521
(734 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g65200.1 68418.m08200 armadillo/beta-catenin repeat family pr... 31 1.0
At3g07100.1 68416.m00845 protein transport protein Sec24, putati... 28 5.6
At2g23130.2 68415.m02759 arabinogalactan-protein (AGP17) identic... 28 7.4
At2g23130.1 68415.m02760 arabinogalactan-protein (AGP17) identic... 28 7.4
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui... 27 9.8
At4g32820.1 68417.m04668 expressed protein ; expression supporte... 27 9.8
At3g59360.2 68416.m06620 nucleotide-sugar transporter family pro... 27 9.8
At3g59360.1 68416.m06619 nucleotide-sugar transporter family pro... 27 9.8
At3g01990.1 68416.m00158 ACT domain-containing protein (ACR6) co... 27 9.8
>At5g65200.1 68418.m08200 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 556
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 453 TAYSQYVATCSGPFPPLPAASCPSCRAKTASPSSSRYRSL 334
T+ + V PF PLP + P+C + + S SSS +L
Sbjct: 170 TSSDESVIVAHSPFTPLPLTTRPACFSPSPSSSSSEIETL 209
>At3g07100.1 68416.m00845 protein transport protein Sec24, putative
similar to protein transport protein Sec24A
(SEC24-related protein) [Homo sapiens] SWISS-PROT:O95486
Length = 1038
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +3
Query: 225 WIDVSGSRGCSKNRLHMDRNPQHSRITDPSNPAGRRKEIDNVMKKARQSSP 377
W S +KN L +D SR+T G K++ ++KK R+S P
Sbjct: 938 WFGRMLSPDIAKNLLGVDFAADLSRVTFQEQENGMSKKLMRLVKKLRESDP 988
>At2g23130.2 68415.m02759 arabinogalactan-protein (AGP17) identical
to gi_11935086_gb_AAG41963
Length = 162
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -1
Query: 632 PELPRSADWTAPYRAPSRAMSGRANRAAGPAPVLEI*TSEA--GRRPGTPG*ARAGSP 465
PE+ SAD AP + + + A P P E+ + A G PG PG + A SP
Sbjct: 97 PEIAPSADVPAPALTKHKKKTKKHKTAPAPGPASELLSPPAPPGEAPG-PGPSDAFSP 153
>At2g23130.1 68415.m02760 arabinogalactan-protein (AGP17) identical
to gi_11935086_gb_AAG41963
Length = 185
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -1
Query: 632 PELPRSADWTAPYRAPSRAMSGRANRAAGPAPVLEI*TSEA--GRRPGTPG*ARAGSP 465
PE+ SAD AP + + + A P P E+ + A G PG PG + A SP
Sbjct: 97 PEIAPSADVPAPALTKHKKKTKKHKTAPAPGPASELLSPPAPPGEAPG-PGPSDAFSP 153
>At4g38600.1 68417.m05464 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12
(TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1888
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = -3
Query: 432 ATCSGPFPPLPAASCPSCRAKTASPSSSRYRSL 334
++ S P PP P+AS P+ R+K A SSS SL
Sbjct: 18 SSSSSP-PPPPSASGPTTRSKRARLSSSSSSSL 49
>At4g32820.1 68417.m04668 expressed protein ; expression supported by
MPSS
Length = 1817
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +3
Query: 336 EIDNVMKKARQSSPG-SWDRKLLEVEEKDPNR 428
EID ++KK R+ +PG + ++K LEV + +R
Sbjct: 1394 EIDGMVKKGRRKTPGLAGNKKALEVNLPESSR 1425
>At3g59360.2 68416.m06620 nucleotide-sugar transporter family
protein low similarity to SP|P78382 CMP-sialic acid
transporter {Homo sapiens}; contains Pfam profile
PF04142: Nucleotide-sugar transporter
Length = 405
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -3
Query: 396 ASCPSCRAKTASPSSSRYRSLYD 328
A CP+C +K SP S YD
Sbjct: 6 AECPACHSKLVSPGSKTISRAYD 28
>At3g59360.1 68416.m06619 nucleotide-sugar transporter family
protein low similarity to SP|P78382 CMP-sialic acid
transporter {Homo sapiens}; contains Pfam profile
PF04142: Nucleotide-sugar transporter
Length = 405
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -3
Query: 396 ASCPSCRAKTASPSSSRYRSLYD 328
A CP+C +K SP S YD
Sbjct: 6 AECPACHSKLVSPGSKTISRAYD 28
>At3g01990.1 68416.m00158 ACT domain-containing protein (ACR6)
contains Pfam ACT domain PF01842; similar to uridylyl
transferase-like proteins GB:AAD20075, GB:AAC00631
[Arabidopsis thaliana]
Length = 433
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 336 EIDNVMKKARQSSPGSWDRKLLEVEEKDPNRWRHT 440
+++ V+KKA SS G W + +V ++D N+ R T
Sbjct: 51 DMNLVIKKAYISSDGGWFMDVFKVIDQDGNKIRDT 85
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,696,096
Number of Sequences: 28952
Number of extensions: 309401
Number of successful extensions: 1048
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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