Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0520
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF003130-18|AAO38640.1|  441|Caenorhabditis elegans Prion-like-(...    27   9.5  
AF003130-17|AAB54127.1|  470|Caenorhabditis elegans Prion-like-(...    27   9.5  
AF003130-16|AAK68879.1|  457|Caenorhabditis elegans Prion-like-(...    27   9.5  
AF003130-15|AAM45365.1|  465|Caenorhabditis elegans Prion-like-(...    27   9.5  

>Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical
           protein F49A5.4 protein.
          Length = 308

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 544 GVPHLLHNSLDRKMDNCLFFFNDF 615
           G P L  N +  +  NCLF +ND+
Sbjct: 261 GTPPLFTNMIQLENGNCLFLYNDY 284


>AF003130-18|AAO38640.1|  441|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 44,
           isoform d protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 602 FLMILVRIFDVDWLVLWARRGNLSLNI 682
           FLM+L R+ D   + L A   N+SLN+
Sbjct: 371 FLMLLYRVIDESTVCLMAHERNMSLNM 397


>AF003130-17|AAB54127.1|  470|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 44,
           isoform a protein.
          Length = 470

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 602 FLMILVRIFDVDWLVLWARRGNLSLNI 682
           FLM+L R+ D   + L A   N+SLN+
Sbjct: 400 FLMLLYRVIDESTVCLMAHERNMSLNM 426


>AF003130-16|AAK68879.1|  457|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 44,
           isoform b protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 602 FLMILVRIFDVDWLVLWARRGNLSLNI 682
           FLM+L R+ D   + L A   N+SLN+
Sbjct: 387 FLMLLYRVIDESTVCLMAHERNMSLNM 413


>AF003130-15|AAM45365.1|  465|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 44,
           isoform c protein.
          Length = 465

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 602 FLMILVRIFDVDWLVLWARRGNLSLNI 682
           FLM+L R+ D   + L A   N+SLN+
Sbjct: 395 FLMLLYRVIDESTVCLMAHERNMSLNM 421


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,210,197
Number of Sequences: 27780
Number of extensions: 316165
Number of successful extensions: 694
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)