Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0520
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14790.1 68414.m01768 RNA-dependent RNA polymerase, putative ...    31   0.72 
At5g49820.1 68418.m06170 expressed protein contains Pfam domain,...    30   1.3  
At5g24340.1 68418.m02868 3'-5' exonuclease domain-containing pro...    30   1.3  
At3g50070.1 68416.m05474 cyclin family protein similar to cyclin...    29   2.9  
At2g45610.1 68415.m05671 expressed protein low similarity to PrM...    28   6.7  
At4g22730.1 68417.m03279 leucine-rich repeat transmembrane prote...    27   8.8  
At1g19470.1 68414.m02425 kelch repeat-containing F-box family pr...    27   8.8  

>At1g14790.1 68414.m01768 RNA-dependent RNA polymerase, putative
           similar to RNA-directed RNA polymerase GB:CAA09697
           GI:4138282 [Nicotiana tabacum]
          Length = 1107

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = -3

Query: 239 PHIFTQSSVFSFSNRLTGESSTWEPFIRDSNRN*LRVYVTIVVAGLRREGGGVVASRGRF 60
           P+  +   V  F  RLTG  + +   +R   +   RVY  +     R     + A+  R 
Sbjct: 11  PNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTRLIITAAAERL 70

Query: 59  YFKYNYLKCITI 24
           Y+  +YLK   +
Sbjct: 71  YYGRSYLKAFEV 82


>At5g49820.1 68418.m06170 expressed protein contains Pfam domain,
           PF04884: Protein of unknown function, DUF647
          Length = 497

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -3

Query: 635 RHQIFAPKSLKKNKQLSILRSKLLCNKWGTPTDYATLDPSQLPTTYETDSEKSNXC 468
           +HQ  +   LK      +L   +  +K G P     LDP+  PT YE +S  +  C
Sbjct: 402 KHQANSDDILKAAFHAHVLLHFMNQSKDGNPRSVEQLDPAFAPTEYELESRIAESC 457


>At5g24340.1 68418.m02868 3'-5' exonuclease domain-containing
           protein contains Pfam profile PF01612: 3'-5' exonuclease
          Length = 505

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = -3

Query: 677 LTKDFRVAPTEPTSRHQIFAPKSLKKNKQL 588
           LT+D ++   +  ++HQI+  KSL KN+QL
Sbjct: 387 LTRDTKLLRHQDLAKHQIYRVKSLLKNEQL 416


>At3g50070.1 68416.m05474 cyclin family protein similar to cyclin
           D3.1 protein [Nicotiana tabacum] GI:4160300, CycD3;2
           [Lycopersicon esculentum] GI:6434199; contains Pfam
           profiles PF00134: Cyclin, N-terminal domain, PF02984:
           Cyclin, C-terminal domain
          Length = 361

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = -3

Query: 644 PTSRHQIFAPKSLKKNKQLSILRSKLLCNKWGTPTDYATLDPSQLPTTYETDSEKSNXC 468
           P SR   F+P  L     +S++R   +C++         +  SQL T  + DSEK N C
Sbjct: 224 PDSRFLSFSPSVLATAIMVSVIRDLKMCDE--------AVYQSQLMTLLKVDSEKVNKC 274


>At2g45610.1 68415.m05671 expressed protein low similarity to PrMC3
           [Pinus radiata] GI:5487873
          Length = 324

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +1

Query: 499 YVVGSWEGSSVA*SVGVPHLLHNSLDRKMDNCLFFFNDFG 618
           Y+ GS  G+++A  + +  L H+    ++D C+F+   FG
Sbjct: 166 YICGSSNGANIAFQLALRSLDHDLTPLQIDGCVFYQPLFG 205


>At4g22730.1 68417.m03279 leucine-rich repeat transmembrane protein
           kinase, putative leucine rich repeat receptor-like
           kinase, Oryza sativa, PATCHX:E267533
          Length = 688

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 284 EPLGGSVRGTVSTSRPHIFTQSSVFSFS 201
           +PLG S  G   +  PH+F  +S F F+
Sbjct: 377 DPLGDSRNGAEFSQEPHLFVVNSSFRFN 404


>At1g19470.1 68414.m02425 kelch repeat-containing F-box family
           protein low similarity to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 412

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 255 RINLAATYFYSVICFFL*QPADWRVLH 175
           R+ L+ T+ Y+ I F    PA+W +LH
Sbjct: 100 RLGLSETFLYAAIKFPDTNPANWYILH 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,132,862
Number of Sequences: 28952
Number of extensions: 283147
Number of successful extensions: 606
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)