Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0518
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    54   7e-09
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    27   1.7  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    26   2.2  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    26   2.9  
SPBC30D10.12c |rsm27||mitochondrial ribosomal protein subunit S2...    25   3.9  
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    25   5.1  
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|...    25   5.1  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   5.1  
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    25   5.1  
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...    24   8.9  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    24   8.9  

>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 54.4 bits (125), Expect = 7e-09
 Identities = 30/62 (48%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
 Frame = +3

Query: 255 IXXNTEXIKVXKTLPYLVSXVXELXDVDPQE-EEEDGAVVDLDSQRKGKCAVIKTSTRQT 431
           I  N E I   K LPYLV  V E+ D+ P E + ++ A  + ++ R GK AVIKTSTRQT
Sbjct: 71  IKENQEKISNNKMLPYLVGNVVEILDMQPDEVDVQESANQNSEATRVGKSAVIKTSTRQT 130

Query: 432 YF 437
            F
Sbjct: 131 IF 132



 Score = 46.0 bits (104), Expect = 3e-06
 Identities = 21/50 (42%), Positives = 31/50 (62%)
 Frame = +1

Query: 109 DGEEALSEEVLRMPTDEIVSRTRLLXNXIKIMXSEVMRXSHELQAXNDKL 258
           +G + + +E+L    DE+ SRTRLL N IK+M SE  R +HE     +K+
Sbjct: 22  EGLDGIEQEILAAGIDELNSRTRLLENDIKVMKSEFQRLTHEKSTMLEKI 71


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 11/38 (28%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = +1

Query: 37  KDYYEKTNHNITMATT--LEDKSIWEDGEEALSEEVLR 144
           ++  E+  H++++     +ED++I +DGE A++E+  R
Sbjct: 134 EEIIEQAQHDVSLRNLSGIEDENIIDDGETAINEQKKR 171


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 330 DVDPQEEEEDGAVVDLDSQRKGKCAVIKTST 422
           +VD  +EEED  V D D        VI  ST
Sbjct: 251 EVDDDDEEEDEVVTDDDGTSNADSEVITAST 281


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 28  LNLKDYYEKTNHNITMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRL 180
           + LKDY +      T+   L D+ I  DG++    E++   + EI  +T L
Sbjct: 848 ITLKDYVDSFKPTNTVIKPLGDRDIMPDGQQLF--ELMATYSVEISEKTEL 896


>SPBC30D10.12c |rsm27||mitochondrial ribosomal protein subunit
           S27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 16  VQEL--LNLKDYYEKTNHNITMATTLEDKSIWEDGEEALSEEV 138
           VQEL    LK YY  T +   + T L DK+ + D +E L  E+
Sbjct: 35  VQELKGAKLKSYYPATINYRQLRTLLNDKT-FPDSDEELRMEI 76


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 100 IWEDGEEALSEEVLRMPTDEIVSRTRLLXN 189
           ++ DGE+ L  E+ ++PT+ I S T    N
Sbjct: 324 LFVDGEKGLRSELSQIPTENIDSTTDRFDN 353


>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 43  YYEKTNHNITMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSR 171
           YY K N N      ++D ++W DG      E  +    E ++R
Sbjct: 199 YYHKNNRNPIDWKLVQDCAMWPDGYPGTGRESEKGSNLEAITR 241


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 1   VKCVWVQELLNLKDYYEKTNHNI 69
           VK +WV  L NL+DY +KT  N+
Sbjct: 876 VKHLWV--LANLRDYVKKTKINL 896


>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +1

Query: 85  LEDKSIWEDG---EEALSEEVLRMPTDEIVSRTRLLXNXIKI 201
           + DK  WE+    +E     + R+PTD+     +++ N +K+
Sbjct: 462 VHDKKSWEEMNAIQEYFQRPITRVPTDDYEELEKVVKNALKM 503


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = -2

Query: 207 LHYFDXIXQKSGSTYDFISWHAK---NFLTESFLAILPN*LV 91
           L + D   +K G+T  FI WH     N    S  +I+ N ++
Sbjct: 39  LRHVDIEMKKQGNTIKFIVWHGSRKHNACIRSVYSIINNMII 80


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 94  KSIWEDGEEALSEEVLRMPTDEIVSRT 174
           K+I  D E  L+EEVL   TD+ V+ T
Sbjct: 285 KNILNDDELHLTEEVLSFLTDDPVTLT 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,197,354
Number of Sequences: 5004
Number of extensions: 15030
Number of successful extensions: 61
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)