Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0518
         (439 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5903| Best HMM Match : No HMM Matches (HMM E-Value=.)              102   1e-22
SB_36974| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_4879| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.9  
SB_33833| Best HMM Match : DUF947 (HMM E-Value=0.2)                    28   3.9  
SB_11401| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_5903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score =  102 bits (244), Expect = 1e-22
 Identities = 54/76 (71%), Positives = 59/76 (77%), Gaps = 1/76 (1%)
 Frame = +3

Query: 213 SDEXLARAAGSXR*IXXNTEXIKVXKTLPYLVSXVXELXDVDPQE-EEEDGAVVDLDSQR 389
           +DE ++RA      I  N+E IKV KTLPYLVS V EL DVDPQ+  EEDGA VDLDSQR
Sbjct: 26  TDEIVSRARLLDNEIKENSEKIKVNKTLPYLVSNVIELLDVDPQDYAEEDGANVDLDSQR 85

Query: 390 KGKCAVIKTSTRQTYF 437
           KGKCAVIKTSTRQTYF
Sbjct: 86  KGKCAVIKTSTRQTYF 101



 Score = 63.3 bits (147), Expect = 8e-11
 Identities = 32/42 (76%), Positives = 34/42 (80%)
 Frame = +1

Query: 73  MATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLXNXIK 198
           MA TLEDK+IW DGEE + EEVLRM TDEIVSR RLL N IK
Sbjct: 1   MAATLEDKAIWGDGEE-MGEEVLRMSTDEIVSRARLLDNEIK 41


>SB_36974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 634

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +3

Query: 321 ELXDVDPQEEEEDGAVVD 374
           ++ D+ PQ+EEEDG V++
Sbjct: 527 DIVDLQPQDEEEDGEVIE 544


>SB_4879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 31  NLKDYYEKTNHNITMATTLEDKSIWEDGEEALSEEVLR 144
           N  + YE  N +  M + L+D    E GEE   EEV R
Sbjct: 391 NNNNNYESDNSDTNMISDLDDDDDDESGEEEEEEEVNR 428


>SB_33833| Best HMM Match : DUF947 (HMM E-Value=0.2)
          Length = 1106

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +3

Query: 321  ELXDVDPQEEEEDGAVVD 374
            ++ D+ PQ+EEEDG V++
Sbjct: 982  DIVDLQPQDEEEDGEVIE 999


>SB_11401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 439

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +3

Query: 321 ELXDVDPQEEEEDGAVVD 374
           ++ D+ PQ+EEEDG V++
Sbjct: 22  DIVDLQPQDEEEDGEVIE 39


>SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1399

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +3

Query: 330 DVDPQEEEEDGAVVDLDSQRKGKCAVIKTS-TRQTY 434
           D  P+E + DGAVV++ S  +G   V ++S +RQ+Y
Sbjct: 478 DEVPEEMDSDGAVVNIQSAMRGH--VTRSSLSRQSY 511


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,821,852
Number of Sequences: 59808
Number of extensions: 111314
Number of successful extensions: 277
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)