Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0517
(745 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 29 0.53
SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase |Schizos... 29 0.92
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy... 28 1.2
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 27 2.1
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c... 27 2.8
SPCC1442.13c |||RNA-binding protein, G-pathc type|Schizosaccharo... 27 3.7
SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit Sen34|Sc... 27 3.7
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 26 4.9
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 26 6.5
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.6
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 29.5 bits (63), Expect = 0.53
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 285 DRINTYTFCIGIICLTNKLISLRPSFVVPLTSSYTSVCLYQ 163
DR+N + I T ++SL P F+ S TS+C Y+
Sbjct: 674 DRMNNTVYVKNISPFTQDVLSLNPHFLFSNGSCNTSLCYYE 714
>SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 28.7 bits (61), Expect = 0.92
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = +1
Query: 277 YSVEDIFAREALAYRELCPVFEDLQIEAGIPENERFKMVKKQECTKDVIILKNVCKKGYK 456
Y V A E R + FED Q I + K + +CT +IL N +
Sbjct: 260 YIVSPDMAYEVAKRRNIIIPFEDAQTGYSIYLSGNVKNAEFSKCTLYDLILPNEGFNYRQ 319
Query: 457 TYYRMDVVS-PKFAELAIKNWRDSMVSHWFWK 549
+Y R+D ++ K + + S VS+WF K
Sbjct: 320 SYLRIDAIAVHKLKSIPLL----STVSNWFKK 347
>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 613
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -1
Query: 691 PYFSLLSSSKSFIDDLETFPTKSFQASPKIKGCFKH 584
PY + +++++ +D+ T F+ASP + G F H
Sbjct: 262 PYPIITFATQNYGEDISNVNTTFFEASPNVFGTFDH 297
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 303 SCKDIFDRINTYTFCIGIICLTNKL 229
+C D DR N CIG LTN+L
Sbjct: 378 NCMDCLDRTNVVQSCIGRWVLTNQL 402
>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = -1
Query: 373 FQVFQLRFEDLRKPDRALYKPMLLLQRYLRPNKYLYVLHWYNLLNK 236
+Q+F + + L D LY P+L L Y+ P+K L+ + +L+N+
Sbjct: 63 YQIFYVTLDPL---DGLLYSPVLYLFSYILPSK-LFTIFSRSLVNR 104
>SPCC1442.13c |||RNA-binding protein, G-pathc
type|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 302 EKHWLIESSVRFSKIFKSKLEYLKTRDLKW*KNKNVQ 412
++H+ +++ V+ SK KSKL + + LK K K VQ
Sbjct: 84 DRHFALQTDVKLSKKRKSKLVEMTPKGLK--KRKRVQ 118
>SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit
Sen34|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 26.6 bits (56), Expect = 3.7
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = +2
Query: 251 IPMQNV*VFIRSKISLQEKHWLIESSVRF----SKIFKSKLEYLKTRDLKW*KNKNVQKT 418
+P QNV + + ++S +E +LIE + + +K+ K LE D+K K +++
Sbjct: 43 LPQQNVFLGLPMELSKEEAFYLIEKGISYIVDDTKVHKQLLENTTKDDVKQCLKK--RQS 100
Query: 419 LSF*RMFVRK 448
L++ +M K
Sbjct: 101 LAYDQMIAAK 110
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -1
Query: 382 ISRFQVFQLRFEDLR-KPDRALYKPMLLLQRYLRP 281
+SRF + + +D+ K DRAL + +L + RYL P
Sbjct: 487 LSRFDLLFIVTDDIDDKKDRALSEHVLRMHRYLPP 521
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 25.8 bits (54), Expect = 6.5
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +3
Query: 570 DEVFKCLKQPFIFGEAWNDFVGNVSKSSIKLLDDDKREKYGVRS 701
+ + + LKQ F E + F+ VSK +IK D+D + K+G +S
Sbjct: 1053 NNIMERLKQEF--EERYKGFL--VSKKAIKANDEDLKAKFGNKS 1092
>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 103
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 229 HFFAAVFCCSSDIFVYISLF 170
+FF F CS +F YISLF
Sbjct: 84 YFFFYSFLCSPYLFKYISLF 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,267,654
Number of Sequences: 5004
Number of extensions: 73771
Number of successful extensions: 240
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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