Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0517
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44237| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.18 
SB_31358| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_29939| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  

>SB_44237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +3

Query: 543 LEKQRPKYFDEVFKCLKQPFIFGEAWNDFVGNVSKSSIKLLDDDKR 680
           +E +RP+   +  KCL++  I G+     + N +KS   LLD++KR
Sbjct: 1   MEVERPQGKHQASKCLQECMISGQRLRQAIENPAKSVNTLLDEEKR 46


>SB_31358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 581

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 7   LYIQVNCSGTRLFRIYLNVCFCL-RALRILVDIYLTFKYHKLVSRVCLD 150
           L++ + C    LF + L VCF L  ALR+ + +     + KL+  + +D
Sbjct: 447 LFLLIQCDFLGLFAMALRVCFLLFEALRVHLKLQFEMFFKKLMEILTMD 495


>SB_29939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -1

Query: 697 LTPYFSLLSSSKSFIDDLETFPTKSFQASPKIKGCFKHLNTSSKYFGRCFSKTN 536
           LTP+ ++ ++   +I     F  K+  A+   K C+  LNT +  +G C    N
Sbjct: 705 LTPFVTMANAPTPWIHSAGIFGEKA--ATNAAKSCYDKLNTEASGYGTCDETKN 756


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,711,123
Number of Sequences: 59808
Number of extensions: 491353
Number of successful extensions: 1735
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1735
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)