Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0517
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63410.1 68418.m07960 leucine-rich repeat transmembrane prote...    30   1.4  
At1g33050.2 68414.m04070 expressed protein                             29   3.3  
At1g08920.2 68414.m00993 sugar transporter, putative similar to ...    29   4.3  
At3g21720.1 68416.m02740 isocitrate lyase, putative similar to i...    28   7.5  
At5g42130.1 68418.m05129 mitochondrial substrate carrier family ...    27   9.9  
At3g51770.1 68416.m05677 tetratricopeptide repeat (TPR)-containi...    27   9.9  
At3g14820.1 68416.m01872 GDSL-motif lipase/hydrolase family prot...    27   9.9  
At1g36180.1 68414.m04497 acetyl-CoA carboxylase 2 (ACC2) nearly ...    27   9.9  

>At5g63410.1 68418.m07960 leucine-rich repeat transmembrane protein
           kinase, putative contains similarity to receptor-like
           protein kinase
          Length = 680

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/81 (27%), Positives = 38/81 (46%)
 Frame = +3

Query: 459 VLQNGRSVSEICGIGYQELARFHGLSLVLEKQRPKYFDEVFKCLKQPFIFGEAWNDFVGN 638
           +L N R +SE    G ++L      SL    +  K FD+    L +  ++G  +   + N
Sbjct: 366 ILSNARYISETSKFGSEDLPVCRQFSLEEIVKATKNFDKTM-ILGESSLYGTLYKGNLEN 424

Query: 639 VSKSSIKLLDDDKREKYGVRS 701
            +K +I+ L   K  KY +R+
Sbjct: 425 GTKVAIRCLPSSK--KYSIRN 443


>At1g33050.2 68414.m04070 expressed protein
          Length = 607

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -2

Query: 375 VFRYSSFDLKIFENRTELSISQCF 304
           V +Y+S+DLK+  N++++  S CF
Sbjct: 577 VAQYNSYDLKLLPNKSKVCCSNCF 600


>At1g08920.2 68414.m00993 sugar transporter, putative similar to
           ERD6 protein {Arabidopsis thaliana} GI:3123712,
           sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 477

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 1   NELYIQVNCSGTRLFRIYLNVCFCLRALRILVDI 102
           N+LY+Q +  G   F + L+  FC R+  +L ++
Sbjct: 335 NDLYLQASTGGMCFFSLLLSFSFCFRSYGMLDEL 368


>At3g21720.1 68416.m02740 isocitrate lyase, putative similar to
           isocitrate lyase GI:167144 from [Brassica napus]
          Length = 576

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 373 NERFKMVKKQECTKDVIILKNVCKKGY 453
           +ERFK+ ++    +DV+ L+   K+GY
Sbjct: 31  SERFKLTRRPYTARDVVALRGHLKQGY 57


>At5g42130.1 68418.m05129 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 412

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = -1

Query: 742 GYPKYNL---HIRNNIQDLTPYFSLLSSSKSFIDDLETFPTKSFQASPKIKGCFK 587
           G P  NL   H  N    L  +FS L+S +S I       TKS Q  PK    F+
Sbjct: 10  GLPSPNLNHCHFPNEFNSLFTHFSDLTSVQSPIVRNPKLKTKSSQKPPKFSANFR 64


>At3g51770.1 68416.m05677 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 958

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 141 MFRQICNTDTNRLMYTKMSEEQQKTAAKK*VCLLSKLYQCRTYKYLF 281
           M + I     N   Y K SE   +  A+  +CL ++L   RTY Y +
Sbjct: 834 MTKLIEKAQNNASAYEKRSEYCDREMAQSDLCLATQLDPLRTYPYRY 880


>At3g14820.1 68416.m01872 GDSL-motif lipase/hydrolase family protein
           similar to family II lipase EXL3 GI:15054386 from
           [Arabidopsis thaliana]; contains Pfam profile PF00657:
           GDSL-like Lipase/Acylhydrolase
          Length = 311

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 24/69 (34%), Positives = 30/69 (43%)
 Frame = +3

Query: 495 GIGYQELARFHGLSLVLEKQRPKYFDEVFKCLKQPFIFGEAWNDFVGNVSKSSIKLLDDD 674
           G GY  L     LS+V    + KYF E    +KQ   FGE    F+   S   +    +D
Sbjct: 76  GSGYDPLTSTL-LSVVSMSDQLKYFQEYLAKIKQH--FGEEKVKFILEKSVFLVVSSSND 132

Query: 675 KREKYGVRS 701
             E Y VRS
Sbjct: 133 LAETYWVRS 141


>At1g36180.1 68414.m04497 acetyl-CoA carboxylase 2 (ACC2) nearly
           identical to acetyl-CoA carboxylase 2 (ACC2)
           [Arabidopsis thaliana] GI:11869928
          Length = 1755

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 353 SKLEYLKTRDLKW*KNKNVQKTLSF*RMFVRKAIKRTT 466
           S ++Y  +RD +W       + +   RMF+R  +++TT
Sbjct: 779 SNIQYSPSRDRQWHMYSVTDRPVPIKRMFLRSLVRQTT 816


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,132,923
Number of Sequences: 28952
Number of extensions: 350186
Number of successful extensions: 992
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)