Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0516
(553 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 54 5e-08
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 54 5e-08
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 45 4e-05
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 44 9e-05
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 43 2e-04
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 42 2e-04
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 42 3e-04
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 42 3e-04
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 42 3e-04
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 42 4e-04
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 42 4e-04
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 41 5e-04
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 40 0.001
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 40 0.001
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 40 0.001
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 40 0.001
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 40 0.001
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 40 0.001
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 39 0.003
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 39 0.003
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 39 0.003
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 39 0.003
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 38 0.003
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 38 0.003
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 38 0.003
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 38 0.003
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 38 0.003
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 38 0.004
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 38 0.004
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 38 0.004
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 38 0.006
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 37 0.008
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 37 0.008
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 37 0.008
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 37 0.008
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 37 0.008
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 37 0.008
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 37 0.008
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 37 0.008
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 37 0.008
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 37 0.010
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 37 0.010
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 37 0.010
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 36 0.014
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 36 0.014
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 36 0.014
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 36 0.018
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 36 0.018
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 36 0.018
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 36 0.018
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 36 0.024
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 36 0.024
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 35 0.031
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 35 0.042
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 35 0.042
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 35 0.042
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 35 0.042
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 35 0.042
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 34 0.055
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 34 0.055
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 34 0.055
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 34 0.055
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 34 0.055
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 34 0.073
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 34 0.073
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 34 0.073
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 33 0.096
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 33 0.096
At2g47310.1 68415.m05906 flowering time control protein-related ... 33 0.096
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 33 0.096
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 33 0.13
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 33 0.13
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 33 0.13
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 33 0.13
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 33 0.13
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 33 0.13
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 33 0.13
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 33 0.17
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 32 0.22
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 32 0.22
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 32 0.22
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 32 0.29
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 32 0.29
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 32 0.29
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 32 0.29
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 31 0.39
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 31 0.39
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 31 0.39
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 31 0.39
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 31 0.39
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 31 0.39
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 31 0.39
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 31 0.39
At5g51300.2 68418.m06360 splicing factor-related contains simila... 31 0.51
At5g51300.1 68418.m06359 splicing factor-related contains simila... 31 0.51
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 31 0.51
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 31 0.51
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 31 0.68
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 31 0.68
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 30 0.89
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 30 0.89
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 30 0.89
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 30 0.89
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 30 0.89
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 30 0.89
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 30 0.89
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 30 0.89
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 30 1.2
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 30 1.2
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 30 1.2
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 30 1.2
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 30 1.2
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 30 1.2
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 30 1.2
At1g47620.1 68414.m05289 cytochrome P450, putative similar to cy... 30 1.2
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 30 1.2
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 29 1.6
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 29 1.6
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 29 2.1
At5g03480.1 68418.m00304 expressed protein ; expression support... 29 2.1
At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing ... 29 2.1
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 29 2.1
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 29 2.7
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 29 2.7
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 29 2.7
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 29 2.7
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 29 2.7
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 29 2.7
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 28 3.6
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 28 3.6
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 28 3.6
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 28 3.6
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 28 4.8
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 28 4.8
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 28 4.8
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 28 4.8
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 27 6.3
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 27 6.3
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 27 6.3
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 27 6.3
At3g61830.1 68416.m06941 transcriptional factor B3 family protei... 27 6.3
At3g14840.2 68416.m01875 leucine-rich repeat family protein / pr... 27 6.3
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 27 6.3
At3g56430.1 68416.m06276 expressed protein unknown protein At2g4... 27 8.3
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 27 8.3
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 54.4 bits (125), Expect = 5e-08
Identities = 22/41 (53%), Positives = 34/41 (82%)
Frame = +3
Query: 255 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 377
+SRGFAFVR+ + +A +A++ +DGR++DGRE+ VQ A+YG
Sbjct: 55 DSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYG 95
Score = 50.4 bits (115), Expect = 8e-07
Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = +1
Query: 106 YGRP-PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 252
+GR PP I SL V N+T+RTT +DL +F + G+V D++IPRDR T
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRT 53
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 54.4 bits (125), Expect = 5e-08
Identities = 22/41 (53%), Positives = 34/41 (82%)
Frame = +3
Query: 255 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 377
+SRGFAFVR+ + +A +A++ +DGR++DGRE+ VQ A+YG
Sbjct: 55 DSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYG 95
Score = 50.4 bits (115), Expect = 8e-07
Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = +1
Query: 106 YGRP-PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 252
+GR PP I SL V N+T+RTT +DL +F + G+V D++IPRDR T
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRT 53
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 44.8 bits (101), Expect = 4e-05
Identities = 22/37 (59%), Positives = 25/37 (67%)
Frame = +1
Query: 142 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 252
SL V NL + EDLRR FE+ G V DIY+PRD YT
Sbjct: 38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYT 74
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +3
Query: 255 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
+ RGF F++F + DA EA MDG +L GREL V A
Sbjct: 76 DPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFA 113
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 43.6 bits (98), Expect = 9e-05
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = +1
Query: 142 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 252
SL V NL + EDLR+ FE+ G V DIY+PRD YT
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYT 73
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +3
Query: 255 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
+ RGF FV+F + DA +A MDG +L GREL V A
Sbjct: 75 DPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFA 112
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = +1
Query: 142 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 252
SL V N+ PE+LR FER G V D+YIPRD Y+
Sbjct: 48 SLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYS 84
Score = 36.3 bits (80), Expect = 0.014
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +3
Query: 255 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
+ RGFAFV F + DA EA +M+ R GRE+ V +A
Sbjct: 86 QPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVVVA 123
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 42.3 bits (95), Expect = 2e-04
Identities = 18/42 (42%), Positives = 30/42 (71%)
Frame = +3
Query: 252 KESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 377
K S+G+AF++F + DA A++TMD RM +GR + + +A+ G
Sbjct: 78 KRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDIAKPG 119
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +3
Query: 264 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 377
G+AFV F + RDAE+A+ DG DG LRV++A G
Sbjct: 46 GYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGG 83
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +3
Query: 264 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 377
G+AFV F + RDAE+A+ DG DG LRV++A G
Sbjct: 46 GYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGG 83
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +3
Query: 264 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 377
G+AFV F + RDAE+A+ DG DG LRV++A G
Sbjct: 46 GYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGG 83
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/37 (56%), Positives = 23/37 (62%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
SRGF FV F E DA A D MDG+ L GR LR+ A
Sbjct: 81 SRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFA 117
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 41.5 bits (93), Expect = 4e-04
Identities = 20/40 (50%), Positives = 24/40 (60%)
Frame = +3
Query: 249 HKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
+++ R F FV F ER DA A+D MDG L GR L V A
Sbjct: 50 NQKHRSFGFVTFLEREDASAAMDNMDGAELYGRVLTVNYA 89
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 41.1 bits (92), Expect = 5e-04
Identities = 18/39 (46%), Positives = 28/39 (71%)
Frame = +3
Query: 252 KESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
++SRG AFV + R DA +A +MD ++L+GR+L V +A
Sbjct: 95 RQSRGVAFVLYVSREDAAKAARSMDAKILNGRKLTVSIA 133
Score = 31.1 bits (67), Expect = 0.51
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 142 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRK 258
+L V NL + T D+ +F G+V + + +DR+TR+
Sbjct: 58 TLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQ 96
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +3
Query: 264 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 377
G+AFV F + RDA++A+ DG DG LRV++A G
Sbjct: 46 GYAFVEFEDARDADDAIYGRDGYDFDGHHLRVELAHGG 83
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +3
Query: 264 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 377
G+AFV F + RDA++A+ DG DG LRV++A G
Sbjct: 46 GYAFVEFEDARDADDAIYGRDGYDFDGHHLRVELAHGG 83
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/40 (47%), Positives = 23/40 (57%)
Frame = +1
Query: 133 GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 252
G L + NL P DLR FER G + DIY+PR+ YT
Sbjct: 45 GPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYT 84
Score = 35.5 bits (78), Expect = 0.024
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3
Query: 255 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
E RGF FV++ DA EA+ M+ +++ GRE+ + A
Sbjct: 86 EPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIVFA 123
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
SRGF FV F A A+ MDG+ L+GR++RV +A
Sbjct: 75 SRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLA 111
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
SRGF FV F A A+ MDG+ L+GR++RV +A
Sbjct: 75 SRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLA 111
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 39.5 bits (88), Expect = 0.001
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 377
SRGF FV F ++DA+ A++ M+G+ L R++R A G
Sbjct: 184 SRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKG 223
Score = 37.1 bits (82), Expect = 0.008
Identities = 17/59 (28%), Positives = 34/59 (57%)
Frame = +3
Query: 192 PRFRKVRRSW*YLHSQRSVHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
P +++ S + S + + K+ + FV +F+RR A A+ +++GR L G+ ++V A
Sbjct: 73 PLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWA 131
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/37 (40%), Positives = 27/37 (72%)
Frame = +3
Query: 261 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
+GF F+ F DA +AL ++DG+++DGR + V++A+
Sbjct: 48 KGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEVAK 84
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
SRGF F+ F E++ +EA+ M+G LDGR + V A+
Sbjct: 47 SRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQ 84
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/38 (42%), Positives = 27/38 (71%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
SRG+ FV + + + E AL+++DG L+GR +RV +A+
Sbjct: 217 SRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQ 254
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 255 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
+SRGFAFV D +D +DG GR L+V A
Sbjct: 124 QSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFA 161
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 377
SRGF FV F ++DA+ A+D + G+ L R++R A G
Sbjct: 179 SRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKG 218
Score = 36.3 bits (80), Expect = 0.014
Identities = 16/47 (34%), Positives = 29/47 (61%)
Frame = +3
Query: 228 LHSQRSVHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
+ S + + KE + FV +F+RR A A+ +++GR L G+ ++V A
Sbjct: 80 VESCKLIRKEKSSYGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWA 126
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
SRGF FV F + A A+ MDG+ L+GR +RV A
Sbjct: 75 SRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
SRGF FV F + A A+ MDG+ L+GR +RV A
Sbjct: 75 SRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +1
Query: 151 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 249
V NLT+RTT +DLRR FE+ G+V D + + Y
Sbjct: 16 VGNLTWRTTADDLRRYFEQFGQVVDANVVSETY 48
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 38.3 bits (85), Expect = 0.003
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 377
SRGF FV F ++DA+ A++ M+G+ + R++R A G
Sbjct: 192 SRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKG 231
Score = 36.7 bits (81), Expect = 0.010
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +3
Query: 228 LHSQRSVHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
+ S + + K+ + FV +F+RR A A+ T++GR + G+ ++V A
Sbjct: 89 IESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWA 135
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 38.3 bits (85), Expect = 0.003
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 377
SRGF FV F ++DA+ A++ M+G+ + R++R A G
Sbjct: 188 SRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKG 227
Score = 36.7 bits (81), Expect = 0.010
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +3
Query: 228 LHSQRSVHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
+ S + + K+ + FV +F+RR A A+ T++GR + G+ ++V A
Sbjct: 89 IESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWA 135
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 37.9 bits (84), Expect = 0.004
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 377
SRGF FV + +AE A+ MDG+ L+GR + V++ G
Sbjct: 43 SRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSVKLFGIG 82
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 37.9 bits (84), Expect = 0.004
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +3
Query: 267 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 377
+ FV F RDAE+A+ DG LDG LRV++A G
Sbjct: 47 YCFVEFEHSRDAEDAIKGRDGYNLDGCRLRVELAHGG 83
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 37.9 bits (84), Expect = 0.004
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +3
Query: 264 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 377
G+AFV F + RDA++A+ DG DG LRV++A G
Sbjct: 46 GYAFVEFEDPRDADDAIYGRDGYDFDGCRLRVEIAHGG 83
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 37.5 bits (83), Expect = 0.006
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
S+GF FV + ++ + A+ ++DG LDGR++RV A
Sbjct: 244 SKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280
Score = 31.5 bits (68), Expect = 0.39
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 359
SRGF FV + E A +G LDGR LRV
Sbjct: 131 SRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRV 164
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
SRGF FV F + + +A++ M+G+ LDGR + V A+
Sbjct: 46 SRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 151 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 246
V L + T EDL+R F + G+V D I DR
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDR 41
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
SRGF FV F + + +A++ M+G+ LDGR + V A+
Sbjct: 46 SRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 151 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 246
V L + T EDL+R F + G+V D I DR
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDR 41
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
SRGF FV F + + +A++ M+G+ LDGR + V A+
Sbjct: 46 SRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 151 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 246
V L + T EDL+R F + G+V D I DR
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDR 41
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
SRGF FV + + EA+ +DG+ L+GR +RV +A
Sbjct: 284 SRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 255 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
+SRGF FV +AE A++ + L+GR L V A
Sbjct: 189 QSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKA 226
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +3
Query: 261 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
R +AFV F + RDA++A +DGR DG + V+ +R
Sbjct: 3 RDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSR 39
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +3
Query: 261 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
R +AFV F + RDA++A +DGR DG + V+ +R
Sbjct: 44 RDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSR 80
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
SRGF FV F + + ++A++ M+G+ LDGR + V A+
Sbjct: 48 SRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
SRGF FV F + + ++A++ M+G+ LDGR + V A+
Sbjct: 48 SRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 37.1 bits (82), Expect = 0.008
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +3
Query: 273 FVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 377
FV FF+ RDA +AL M+G+++ G+ + +Q +R G
Sbjct: 223 FVEFFDVRDAAKALRVMNGKVISGKPMVIQFSRPG 257
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 36.7 bits (81), Expect = 0.010
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
S+ F FV + + A+ A+D M+GR L G++L+VQ+ R
Sbjct: 389 SKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQLKR 426
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 36.7 bits (81), Expect = 0.010
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
SRGF F+ F + + AL TM+G ++GR LR+ +A
Sbjct: 259 SRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 246 VHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 359
V SRGF FV +A+EA+ + + GR ++V
Sbjct: 152 VTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 36.7 bits (81), Expect = 0.010
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
SRGF FV F R DA+ A++ ++G D LRV+ A
Sbjct: 253 SRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWA 289
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 36.3 bits (80), Expect = 0.014
Identities = 14/42 (33%), Positives = 27/42 (64%)
Frame = +3
Query: 252 KESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 377
++S G+ +V F + DA+ A++ M+G+ DGR + V+ + G
Sbjct: 115 RQSLGYGYVWFNSKEDAQSAVEAMNGKFFDGRFILVKFGQPG 156
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 36.3 bits (80), Expect = 0.014
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +3
Query: 261 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
R +AFV F + RDA++A +DGR DG + V+ +R
Sbjct: 44 RDYAFVEFSDPRDADDARYYLDGRDFDGSRITVEASR 80
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 36.3 bits (80), Expect = 0.014
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +3
Query: 261 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
R +AFV F + RDA++A +DGR DG + V+ +R
Sbjct: 3 RDYAFVEFSDPRDADDARYYLDGRDFDGSRITVEASR 39
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 35.9 bits (79), Expect = 0.018
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
SRGF FV F A A+ +DGR L GR ++V A
Sbjct: 80 SRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYA 116
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 35.9 bits (79), Expect = 0.018
Identities = 14/37 (37%), Positives = 26/37 (70%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
S+GF FV ++ ++A+++++G LDGR++RV A
Sbjct: 289 SKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 325
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 359
SRGF FV + E A +G +GR LRV
Sbjct: 139 SRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 35.9 bits (79), Expect = 0.018
Identities = 14/37 (37%), Positives = 26/37 (70%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
S+GF FV ++ ++A+++++G LDGR++RV A
Sbjct: 297 SKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 333
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 359
SRGF FV + E A +G +GR LRV
Sbjct: 139 SRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 35.9 bits (79), Expect = 0.018
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +3
Query: 246 VHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
V +GFAF+R+ +A +A+ M G+ LDGR + V+ A+
Sbjct: 113 VANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAK 154
Score = 28.3 bits (60), Expect = 3.6
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 85 SILLKMSYGRPPPRIDG-MVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRK 258
S L S PP G L V L++RTT + LR FE+ G + + + D+ +
Sbjct: 58 SCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANR 116
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 35.5 bits (78), Expect = 0.024
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 255 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARY 374
E RGFAFV+F + D A++ +G + GR + V+ A +
Sbjct: 59 EHRGFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQAAH 98
Score = 31.5 bits (68), Expect = 0.39
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 261 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
+GFAFV+F ++DA A+ +G M R + V A
Sbjct: 372 KGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWA 407
Score = 31.1 bits (67), Expect = 0.51
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 145 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 243
L + NL ++ P D++ VF G V D++IP++
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKN 365
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 35.5 bits (78), Expect = 0.024
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
SRGFAFV F +A A+ +DG+ L GR +RV A
Sbjct: 74 SRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYA 109
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 35.1 bits (77), Expect = 0.031
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 362
SRGF FV F R DA+ A++ ++G D LRV+
Sbjct: 214 SRGFGFVSFVSREDAQRAINKLNGYGYDNLILRVE 248
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 34.7 bits (76), Expect = 0.042
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
SRGF FV+ + A+ +DG+ L+GR ++V +A
Sbjct: 247 SRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 255 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
+SRGF FV +AE+A++ + ++GR L V A
Sbjct: 152 QSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRA 189
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 34.7 bits (76), Expect = 0.042
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +3
Query: 273 FVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 377
FV F++ RDA A D M+G+ + G+++ ++ +R G
Sbjct: 253 FVEFYDVRDAARAFDRMNGKEIGGKQVVIEFSRPG 287
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 34.7 bits (76), Expect = 0.042
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 362
S+GF FV F + A+D M+G+ LDGR + Q
Sbjct: 84 SKGFRFVTFKDEDSMRTAIDRMNGQELDGRNITAQ 118
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 34.7 bits (76), Expect = 0.042
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
S+ F F+ + + A+ A++TM+G L G++L+VQ+ R
Sbjct: 379 SKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQLKR 416
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 34.7 bits (76), Expect = 0.042
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
S+ F F+ + + A+ A++TM+G L G++L+VQ+ R
Sbjct: 370 SKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQLKR 407
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 34.3 bits (75), Expect = 0.055
Identities = 13/37 (35%), Positives = 26/37 (70%)
Frame = +3
Query: 261 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
+GF F+ F DA++AL ++G++++GR + V+ A+
Sbjct: 107 KGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAK 143
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 34.3 bits (75), Expect = 0.055
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
S+GF FVR+ D+ + + MDG+ LDG + + AR
Sbjct: 96 SKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYAR 133
Score = 33.9 bits (74), Expect = 0.073
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +1
Query: 121 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 246
P+ + +L V L+ RTT E LR F + GEV D + DR
Sbjct: 50 PQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDR 91
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 34.3 bits (75), Expect = 0.055
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 261 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
+G+AF+ + RD + A DG+ +DGR + V + R
Sbjct: 179 KGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVER 215
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 34.3 bits (75), Expect = 0.055
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 261 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
RGF F+ F +RR A++A+ M GR L + + V A
Sbjct: 53 RGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKA 88
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 34.3 bits (75), Expect = 0.055
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 261 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
RGF F+ F +RR A++A+ M GR L + + V A
Sbjct: 53 RGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKA 88
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 33.9 bits (74), Expect = 0.073
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +3
Query: 246 VHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
V S+GF FV F +A++AL +G+ L+GR + V A+
Sbjct: 70 VSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAK 111
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 33.9 bits (74), Expect = 0.073
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 106 YGRPPPRIDGMVS-LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 243
YGR P G+ + + V L + +DLR F R G + D YIP+D
Sbjct: 228 YGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKD 274
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 184 DLRRVFERCGEVGDIYIPRD 243
D R FER GE+ D+Y+P+D
Sbjct: 106 DFRSHFERYGEITDLYMPKD 125
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 33.9 bits (74), Expect = 0.073
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 255 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
+S GF FV F D E A+ ++ +L+G+++RV A
Sbjct: 216 KSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 365
SR F F DA ++ ++G ++GRE++V +
Sbjct: 116 SRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNI 151
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 33.5 bits (73), Expect = 0.096
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
SRG+ FV F A A+ M+G+ L+G + V +A+
Sbjct: 71 SRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAK 108
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 33.5 bits (73), Expect = 0.096
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +3
Query: 255 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 362
ESRGFAF+ F A A+ MDGR++ + L VQ
Sbjct: 55 ESRGFAFIEFESADSAGRAMLHMDGRLIGQKILCVQ 90
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 33.5 bits (73), Expect = 0.096
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +1
Query: 130 DGMVS-LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 252
DG ++ L V ++ T D+R+VFE+ G V +I +P+D+ T
Sbjct: 106 DGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMT 147
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 33.5 bits (73), Expect = 0.096
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 252 KESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
+ESRGF F+ DA + ++D +L GR + V+ AR
Sbjct: 113 RESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKAR 152
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 33.1 bits (72), Expect = 0.13
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 142 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 249
S+ V N+ Y TPE++++ F+ CG V + I D++
Sbjct: 104 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF 139
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 33.1 bits (72), Expect = 0.13
Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Frame = +3
Query: 240 RSVHK--ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 362
R++H ++RGF V +++ R A++A + GR+L GR+L ++
Sbjct: 238 RALHTAGKNRGFIMVSYYDIRAAQKAARALHGRLLRGRKLDIR 280
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/41 (31%), Positives = 28/41 (68%)
Frame = +3
Query: 237 QRSVHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 359
+R++H+ S+ ++ FF+ R A+ AL ++G + GR+L++
Sbjct: 325 RRTMHENSQ--VYIEFFDVRKAKVALQGLNGLEVAGRQLKL 363
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 33.1 bits (72), Expect = 0.13
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 97 KMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERC 210
K S G P +DG + + NL + TT D+R++F C
Sbjct: 248 KTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKLFSDC 285
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 33.1 bits (72), Expect = 0.13
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLD--GRELRVQMAR 371
SRGFAFV F+ DA +AL+ + L+ G+ LRV A+
Sbjct: 498 SRGFAFVHFYSVEDATKALEATNRTALERNGKILRVAYAK 537
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 33.1 bits (72), Expect = 0.13
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
S+G+ FVRF + + AL M+G R++RV +A
Sbjct: 243 SKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIA 279
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 33.1 bits (72), Expect = 0.13
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +1
Query: 121 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 243
P G L V NL + +DLR+VFE G V + +PRD
Sbjct: 279 PYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD 319
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 33.1 bits (72), Expect = 0.13
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 255 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
+S+GF FV F DA A+D ++G+ D +E V A+
Sbjct: 262 KSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQ 300
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
SRG FV F +A A+ M+G+M+ + L V +A+
Sbjct: 366 SRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQ 403
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/35 (28%), Positives = 24/35 (68%)
Frame = +3
Query: 255 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 359
+S+G+ FV++ A+ A+D ++G +L+ +++ V
Sbjct: 171 QSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 32.7 bits (71), Expect = 0.17
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
S+G+ FVRF + + A+ M+G R++RV +A
Sbjct: 254 SKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIA 290
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 32.3 bits (70), Expect = 0.22
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
SRGF F+ F +RR +E++ M GR R + V A
Sbjct: 47 SRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRA 83
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 32.3 bits (70), Expect = 0.22
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 261 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
R +AFV F DA A++++ G L G LR++ A+
Sbjct: 58 RSYAFVNFNHDEDAFAAIESLQGFPLSGNPLRIEFAK 94
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 32.3 bits (70), Expect = 0.22
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 255 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
++RGFAFV +A+ A+D D + GR + V AR
Sbjct: 133 KNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFAR 171
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 31.9 bits (69), Expect = 0.29
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 261 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 365
+G VRF +RRDA++ ++ M+GR R++ +
Sbjct: 454 QGVVLVRFKDRRDAQKCIEAMNGRWYAKRQIHASL 488
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 31.9 bits (69), Expect = 0.29
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 255 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
+S+GF FV F +A +A+ T G+M G+ L V +A+
Sbjct: 342 KSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQ 380
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 261 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
RG+AFV F DA A +T++G + L V A+
Sbjct: 241 RGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQ 277
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 31.9 bits (69), Expect = 0.29
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +3
Query: 261 RGFAFVRFFERRDAEEALDTMDGRMLDGR 347
+GFA+V F + +AE+AL ++ +++DGR
Sbjct: 62 KGFAYVTFSSKEEAEKALLELNAQLVDGR 90
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 31.9 bits (69), Expect = 0.29
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
SRGF FV + +A AL M+G+M+ + L + +A+
Sbjct: 371 SRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQ 408
Score = 29.9 bits (64), Expect = 1.2
Identities = 10/34 (29%), Positives = 24/34 (70%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 359
S+G+ FV+F + A+ A+D ++G +++ +++ V
Sbjct: 175 SKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 31.5 bits (68), Expect = 0.39
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 142 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 249
S+ V N+ Y TPE++++ F+ CG V + I D++
Sbjct: 93 SVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKF 128
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 255 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
+ +GFA+V F E +EAL + L GR+L+V R
Sbjct: 130 QPKGFAYVEFVEVEAVQEALQLNESE-LHGRQLKVLQKR 167
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 31.5 bits (68), Expect = 0.39
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 142 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 249
S+ V N+ Y TPE+++ F+ CG V + I D++
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF 125
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 255 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
+ +GFA+V F E +EAL + L GR+L+V R
Sbjct: 127 QPKGFAYVEFVEVEAVQEALQLNESE-LHGRQLKVSPKR 164
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 31.5 bits (68), Expect = 0.39
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 142 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 249
S+ V N+ Y TPE+++ F+ CG V + I D++
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF 125
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 255 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
+ +GFA+V F E +EAL + L GR+L+V R
Sbjct: 127 QPKGFAYVEFVEVEAVQEALQLNESE-LHGRQLKVSPKR 164
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 31.5 bits (68), Expect = 0.39
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 255 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
+S+GF FV F DA A+++++G D +E V A+
Sbjct: 67 KSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQ 105
Score = 31.1 bits (67), Expect = 0.51
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 240 RSVHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
R + S+G FV F +A EA+ + G+M++ + L V +A+
Sbjct: 165 RDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQ 208
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 31.5 bits (68), Expect = 0.39
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
S+GF FV + DAE+A M+ + LDG + V AR
Sbjct: 74 SKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPAR 111
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 31.5 bits (68), Expect = 0.39
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
S+G FV F +A L+ M+G+M+ G+ L V +A+
Sbjct: 367 SKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQ 404
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 31.5 bits (68), Expect = 0.39
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 261 RGFAFVRFFERRDAEEALDTMDGRMLDGRELR 356
RG +V F R DAE+A MDG +DG+ ++
Sbjct: 139 RGHGYVEFKARADAEKAQLYMDGAQIDGKVVK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 31.5 bits (68), Expect = 0.39
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 261 RGFAFVRFFERRDAEEALDTMDGRMLDGRELR 356
RG +V F R DAE+A MDG +DG+ ++
Sbjct: 139 RGHGYVEFKARADAEKAQLYMDGAQIDGKVVK 170
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 31.1 bits (67), Expect = 0.51
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
S+G+ FV++ + + A A+ M+G +GR L V++A
Sbjct: 520 SKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 31.1 bits (67), Expect = 0.51
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
S+G+ FV++ + + A A+ M+G +GR L V++A
Sbjct: 520 SKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 31.1 bits (67), Expect = 0.51
Identities = 12/35 (34%), Positives = 25/35 (71%)
Frame = +3
Query: 255 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 359
+S+GFAF+ + ++R A+D ++G ++ GR ++V
Sbjct: 75 KSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKV 109
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 151 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRK 258
V + + T DL VF + GE+ D+ + RD+ T K
Sbjct: 40 VGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGK 75
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 31.1 bits (67), Expect = 0.51
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +3
Query: 246 VHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
+ K S+G+AF+ + A AL M+G++++G + V +A+
Sbjct: 318 ISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIVVDVAK 359
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 30.7 bits (66), Expect = 0.68
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 145 LKVDNLTYRTTPEDLRRVFERCGEVGDI 228
L N+ + +TPED+R +FE+ G V DI
Sbjct: 96 LIAQNVPWTSTPEDIRSLFEKYGSVIDI 123
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 237 QRSVHKE--SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
+ S+HK+ +RG F+ +A AL +++ +GR L+V A+
Sbjct: 124 EMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVDYAK 170
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 30.7 bits (66), Expect = 0.68
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +1
Query: 151 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRKVEDSPS*GFSSVVTLKK 309
V +L + EDL++VF GEV ++ I ++ T+K + S F++V K+
Sbjct: 218 VGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKR 270
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 252 KESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 359
K+S+G AF+RF A+ A+ + M++G++ V
Sbjct: 252 KKSKGSAFLRFATVEQAKRAVKELKSPMINGKKCGV 287
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 30.3 bits (65), Expect = 0.89
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 103 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIP 237
+Y PP ++ V NL T E+L++ F + GEV + IP
Sbjct: 225 AYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIP 269
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
S+G+ FV+F E + A+ M+G R +R+ A
Sbjct: 157 SKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAA 193
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 30.3 bits (65), Expect = 0.89
Identities = 12/36 (33%), Positives = 26/36 (72%)
Frame = +3
Query: 261 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
+G+ + F +A++AL+ M+G++L GR++R+ +A
Sbjct: 424 KGYGHIEFASPEEAQKALE-MNGKLLLGRDVRLDLA 458
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 181 EDLRRVFERCGEVGDIYIPRDRYT 252
++LR F +CGEV +++P DR T
Sbjct: 497 KELRSHFSKCGEVTRVHVPTDRET 520
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 30.3 bits (65), Expect = 0.89
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 103 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRK 258
SY R P + V L + T +++RR FE+ GE+ + I D+ T K
Sbjct: 5 SYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGK 56
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 30.3 bits (65), Expect = 0.89
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 103 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRK 258
SY R P + V L + T +++RR FE+ GE+ + I D+ T K
Sbjct: 5 SYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGK 56
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 30.3 bits (65), Expect = 0.89
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 359
S+G+ FV+F + A+ A+D ++G +L+ +++ V
Sbjct: 171 SKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 204
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
SRGF FV + +A A+ M+G+M+ + L V +A+
Sbjct: 367 SRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQ 404
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 30.3 bits (65), Expect = 0.89
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 255 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
+SR F FV F + A A++ M+G ++D +EL V A+
Sbjct: 157 KSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQ 195
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
S+G FV F +A +A+ M+G+M+ + + V +A+
Sbjct: 262 SKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQ 299
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 30.3 bits (65), Expect = 0.89
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 377
SRGF FV + A A+ M + LDGR + V A G
Sbjct: 76 SRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGVHPADSG 115
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 30.3 bits (65), Expect = 0.89
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 252 KESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 362
+ESRGF F+ DA + ++D +L GR + V+
Sbjct: 83 RESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVE 119
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = +3
Query: 264 GFAFVRFFERRDAEEALDTMD----GRMLDGRELRVQMAR 371
GFAFV + RDAE+A+ +D GR GR LRV+ +
Sbjct: 36 GFAFVYMEDERDAEDAIRALDRFEYGR--TGRRLRVEWTK 73
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = +3
Query: 264 GFAFVRFFERRDAEEALDTMD----GRMLDGRELRVQMAR 371
GFAFV + RDAE+A+ +D GR GR LRV+ +
Sbjct: 36 GFAFVYMEDERDAEDAIRALDRFEYGR--TGRRLRVEWTK 73
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGR 347
SRGFAFV +DAE + ++ +L+GR
Sbjct: 112 SRGFAFVTMSSLKDAERCIKYLNQSVLEGR 141
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGR 347
SRGFAFV +DAE + ++ +L+GR
Sbjct: 111 SRGFAFVTMSSLKDAERCIKYLNQSVLEGR 140
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = +3
Query: 264 GFAFVRFFERRDAEEALDTMD----GRMLDGRELRVQMAR 371
GFAFV + RDAE+A+ +D GR GR LRV+ +
Sbjct: 36 GFAFVYMEDERDAEDAIRALDRFEFGR--KGRRLRVEWTK 73
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
SRGF FV F +A++A++++ G L ++L V A
Sbjct: 241 SRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKA 277
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 255 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 359
+S+GF FV+F + A A + G M+ G++L V
Sbjct: 149 QSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFV 183
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/37 (32%), Positives = 25/37 (67%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
S+GF FV F ++++A ++G ++DG+ + V++A
Sbjct: 343 SKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVA 379
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
SRGF F+ + ++ A+++M G+ L R++ V A
Sbjct: 153 SRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYA 189
>At1g47620.1 68414.m05289 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 520
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 137 WSR*K*IILPTERR-LKTYAAFSKGAEKLVISTFPEIGTQG 256
W K I + TE++ LK +A F + EK++ + E+G+QG
Sbjct: 235 WKLQKWIGIGTEKKMLKAHATFDRVCEKIIAAKREELGSQG 275
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 255 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 362
ESRG +V A+ A+ ++DG + GRE+RV+
Sbjct: 147 ESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVR 182
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 145 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 249
L V +L + T +++ +F + G V D+Y+ RD Y
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEY 247
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +3
Query: 228 LHSQRSVHKESRGFAFVRFFERRDAEEALDTMDG 329
++ R +++SRG FV++ + A A+D ++G
Sbjct: 240 VYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNG 273
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 145 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 249
L V +L + T +++ +F + G V D+Y+ RD Y
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEY 247
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +3
Query: 228 LHSQRSVHKESRGFAFVRFFERRDAEEALDTMDG 329
++ R +++SRG FV++ + A A+D ++G
Sbjct: 240 VYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNG 273
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 359
S+G+ FVRF + + A+ M+G+ R +R+
Sbjct: 195 SKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRI 228
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 187 LRRVFERCGEVGDIYIPRDRYTRKVEDSPS 276
L + F CGE+ IY+PRD + +K+ S S
Sbjct: 44 LTKHFASCGEITQIYVPRD-FKKKILKSVS 72
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 187 LRRVFERCGEVGDIYIPRDRYTRKV 261
L + F+ CGE+ +Y+P D Y R V
Sbjct: 133 LEKHFDSCGEIRHVYVPTD-YERGV 156
>At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif (aka RRM, RBD, or RNP domain)
Length = 198
Score = 29.1 bits (62), Expect = 2.1
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +1
Query: 184 DLRRVFERCGEVGDIYIPRDR 246
+L+++F CGE+ D++IP R
Sbjct: 42 ELKKLFSPCGEITDVHIPETR 62
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
S F F + RDA++A +DGR DG + V+ +R
Sbjct: 13 SSHFRNQEFGDPRDADDARHYLDGRDFDGSRITVEFSR 50
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +3
Query: 261 RGFAFVRFFERRDAEEALD-TMDGRMLD 341
R FAFV+F + DA +ALD T + ++LD
Sbjct: 103 RNFAFVQFATQEDATKALDSTHNSKLLD 130
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +3
Query: 243 SVHKESRGFAFVRFFERRDAEEALDTMDGRML--DGRELRVQMAR 371
S+H ++ G+AFV F + RDAE+A+ D R+L V+ A+
Sbjct: 4 SLHIDA-GYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAK 47
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +3
Query: 261 RGFAFVRFFERRDAEEALD-TMDGRMLD 341
R FAFV+F + DA +ALD T + ++LD
Sbjct: 129 RNFAFVQFATQEDATKALDSTHNSKLLD 156
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 264 GFAFVRFFERRDAEEALDTMDGRML--DGRELRVQMAR 371
G+AFV F + RDAE+A+ D R+L V+ A+
Sbjct: 36 GYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAK 73
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 359
S+G+ FVRF + + +A+ M+G R +R+
Sbjct: 240 SKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 273
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 359
S+G+ FVRF + + +A+ M+G R +R+
Sbjct: 238 SKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 271
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 359
S+G+ FVRF + + +A+ M+G R +R+
Sbjct: 238 SKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 271
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +1
Query: 103 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRK 258
SY R P + V L + T +++RR F++ GE+ + I D+ T K
Sbjct: 5 SYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGK 56
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 151 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 246
V L + T EDL+R F + G+V D I DR
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDR 41
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 264 GFAFVRFFERRDAEEALDTMDGRML--DGRELRVQMAR 371
G+AFV F + RDAE+A+ +D + R L V+ A+
Sbjct: 36 GYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAK 73
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +3
Query: 255 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 377
+++GF FV F R+ A+EAL R+L+ R Q+A G
Sbjct: 143 KAKGFGFVMFKTRKGAKEALKEPKKRILN-RTATCQLASMG 182
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +3
Query: 255 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 377
+++GF FV F R+ A+EAL R+L+ R Q+A G
Sbjct: 143 KAKGFGFVMFKTRKGAKEALKEPKKRILN-RTATCQLASMG 182
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 246 VHKESRGFAFVRFFERRDAEEALDTMDGR 332
V + G+AF+ F + RDA +A+ +DG+
Sbjct: 33 VARRPPGYAFLDFEDPRDARDAIRALDGK 61
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 356
S+G+ FVRF + + A+ M+G+ R +R
Sbjct: 214 SKGYGFVRFADESEQIRAMTEMNGQYCSSRPMR 246
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +3
Query: 255 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 368
+S+G+AFV F + A++A++ + + G+ +R ++
Sbjct: 155 DSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLS 192
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 142 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIP 237
+L V N+ T+ E L+ +F+R GEV I P
Sbjct: 293 ALYVKNIPENTSTEQLKELFQRHGEVTKIVTP 324
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 255 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 356
+ +G+AFV F + A EA+DT++ G+ ++
Sbjct: 131 DGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIK 164
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +1
Query: 109 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTR 255
GR I+ L + NL Y ED++ +F GE+ + DR R
Sbjct: 76 GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGR 124
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +1
Query: 109 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTR 255
GR I+ L + NL Y ED++ +F GE+ + DR R
Sbjct: 12 GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGR 60
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +1
Query: 109 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTR 255
GR I+ L + NL Y ED++ +F GE+ + DR R
Sbjct: 78 GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGR 126
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 27.5 bits (58), Expect = 6.3
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = +3
Query: 252 KESRGFAFVRFFERRDAEEALDTMDGRM 335
++S G+ +V F + DA+ A++ M+G++
Sbjct: 96 RQSLGYGYVWFNSKEDAQSAVEAMNGKV 123
>At3g61830.1 68416.m06941 transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related contains Pfam
profile: PF02309 AUX/IAA family
Length = 602
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = -3
Query: 362 LNAKFPAVQHSSVHRVQGFFSVTTLEKPHEGESSTFLVYRSLGM*ISPTSP 210
+NA Q S+ R+ G +S KP T YR G ++ SP
Sbjct: 402 INASLKLFQDPSLERISGGYSSNNSFKPETPPPPTNCSYRLFGFDLTSNSP 452
>At3g14840.2 68416.m01875 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain; contains 2 predicted transmembrane domains
Length = 988
Score = 27.5 bits (58), Expect = 6.3
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Frame = +2
Query: 26 YTKVNLTTL---YYSICLI*AEY---LYYSK*VTEDLRHESMAWSR*K*IILPTERRLKT 187
YT+ L+ + Y ++CL Y L++++ + + S R I + +R +K
Sbjct: 445 YTQARLSAISLTYQALCLGKGNYTVNLHFAEIMFNEKNMYSNLGRRYFDIYVQGKREVKD 504
Query: 188 YAAF--SKGAEKLVISTFPEIGTQGK*RIRLR 277
+ +KG K V+ FP + T GK IRL+
Sbjct: 505 FNIVDEAKGVGKAVVKKFPVMVTNGKLEIRLQ 536
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 246 VHKESRGFAFVRFFERRDAEEALDTMDGR 332
V + G+AF+ F + RDA +A+ +DG+
Sbjct: 33 VARRPPGYAFLDFEDSRDARDAIREVDGK 61
>At3g56430.1 68416.m06276 expressed protein unknown protein
At2g40800 - Arabidopsis thaliana, EMBL:AC007660
Length = 434
Score = 27.1 bits (57), Expect = 8.3
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 374 ISRHLNAKFPAVQHSSVHRVQGFFSVTTLEKPHEGESSTFLVYR-SLGM 231
++ + + F S +V G F+ ++KP + SSTF YR +LG+
Sbjct: 125 VNMNFVSAFRLFSSSGFRKVDGNFARKVVDKPIKAVSSTFARYRMALGL 173
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 258 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 371
SRG+ FV + ++ A + ++DGRE+ V R
Sbjct: 104 SRGYGFVEYETEKEMLRAYEDAHHSLIDGREIIVDYNR 141
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,227,755
Number of Sequences: 28952
Number of extensions: 198467
Number of successful extensions: 738
Number of sequences better than 10.0: 145
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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