Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0515
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    29   0.50 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    28   1.5  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    27   2.7  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   6.1  
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    26   6.1  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    26   6.1  
SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces pombe...    26   6.1  

>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
 Frame = -1

Query: 297 EPIDIHNVN--APPTLNTSS--KVSSIVTTAAPPFKPKRITASRQ 175
           EP+ + N +  +PP +++ S  K SSI+  + PPF+ + IT S +
Sbjct: 600 EPVSLENQSHISPPQVDSQSEYKESSILAPSNPPFETESITDSTE 644


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -3

Query: 712 LIIVDSITKHSTPYNGNIFVXSVVWINNKLD*VSVFTYFYNNCEKSTV 569
           L + D + K STP N ++F+ S    N   D  S   YF   C+ + V
Sbjct: 533 LELQDILVKLSTPKNNDVFIFSSKITNKLNDDQSKLWYFQGLCDFAKV 580


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 487 FVSKILKEILVQPTLKS*FRLQN*MRKSHNSNCCSDKL 374
           FVS++ + +L  P  +  F+LQ+ +RK  NS C   +L
Sbjct: 148 FVSRVRRALLSNP--EQFFKLQDSLRKFKNSECSLSEL 183


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 518  LKYRLNYYKGFRFQNIKRNFSTAYIKILISPSELNAQISQFE 393
            L +RLN Y  F+ Q +K +  T  I +   PS+   Q++  +
Sbjct: 1472 LTFRLNSYVRFKDQKVKSSVETKGIVLSELPSKAIIQVASVD 1513


>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 279 NVNAPPTLNTSSKVSSIVTTAAPPFKPKRITASRQK 172
           N+N  PTLNTSS  S+   + +P  +P   + +  +
Sbjct: 214 NLNHKPTLNTSSTHSNSEESRSPLHEPSEASLAHDE 249


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 484 VSKILKEILVQPTLKS*FRLQN*MRKSHNSNCCSDKL*VFFILFYCLDGW 335
           ++ +L EI V       FRL   MR+     CC+    +F+I FYC D +
Sbjct: 343 IAFVLYEIFVASFPALPFRL---MREPTIGACCAMSF-LFYITFYCWDNY 388


>SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
 Frame = -2

Query: 566 INSLILYVFLRQ-----ILIGLKY--RLNYYKGFRFQNIKRNFSTAYIKILISP 426
           I SL+L +F        +LI L Y  +L    G R QN+  NFS    ++L+ P
Sbjct: 151 IPSLLLLIFFASLKFYFVLITLSYSNKLIVDSGIRPQNLPPNFSGRVTRLLMKP 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,804,149
Number of Sequences: 5004
Number of extensions: 54865
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)