Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0515
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0121 - 12507258-12507968                                         30   2.1  
01_06_1749 - 39636951-39638102                                         29   4.8  
01_06_0355 + 28657833-28660665,28660762-28661126                       28   8.5  

>09_03_0121 - 12507258-12507968
          Length = 236

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -1

Query: 270 APPTLNTSSKVSSIVTTAAPPFKPKRITASRQK*YYAIFL 151
           A PT + ++ VS+  TT  PP  P+   AS Q  YYA+ L
Sbjct: 14  AVPTPSAAAAVST--TTTTPPGTPRATAASPQAGYYAVEL 51


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 237 SSIVTTAAPPFKPKRITA 184
           SS+ + AAPPF P RIT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181


>01_06_0355 + 28657833-28660665,28660762-28661126
          Length = 1065

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -3

Query: 337 WTSSQPT--WC*VVTGAHRHPQRKCATHL 257
           WT++ P   W  V  G HRHP R  A  L
Sbjct: 56  WTAAAPYCGWLGVTCGGHRHPLRVTALEL 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,695,047
Number of Sequences: 37544
Number of extensions: 318094
Number of successful extensions: 581
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)