Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0515
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z81135-4|CAB03457.1|  500|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AL032634-4|CAA21599.1|  500|Caenorhabditis elegans Hypothetical ...    28   5.8  
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.      28   5.8  

>Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical
           protein F55H12.1 protein.
          Length = 768

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 324 SPPGVKWLLEPIDIHNVNAPPTLNTSSKVSSIVTTAAPP 208
           +P   K  + P  +    APPT+ T+   +++ TT APP
Sbjct: 3   TPVSTKKTIAPSTMKTTVAPPTMRTTMAPTTMKTTVAPP 41



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 324 SPPGVKWLLEPIDIHNVNAPPTLNTSSKVSSIVTTAAP 211
           +PP ++  + P  +    APPT+ T+   S++ TT  P
Sbjct: 21  APPTMRTTMAPTTMKTTVAPPTMKTTRSPSTMKTTKEP 58


>Z81135-4|CAB03457.1|  500|Caenorhabditis elegans Hypothetical
           protein W01G7.5 protein.
          Length = 500

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 273 NAPPTLNTSSKVSSIVTTAAPPFKPKRITA 184
           N P T ++SSK +   TT   P  P+RIT+
Sbjct: 168 NTPRTTSSSSKTTINTTTTRIPSTPRRITS 197


>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
           protein T14G8.1 protein.
          Length = 1787

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 307 LNTRWAVSSSTHLSNKIK*KIPIVYRNNNSNCEICAFNSEGEIKI 441
           ++ R A   S   S + + +  +V  N+  NCE+C  N +GE+ +
Sbjct: 237 VDKRKAALESARASKRARKEQGVVEENHQENCEVC--NQDGELML 279


>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
           protein T14G8.1 protein.
          Length = 1787

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 307 LNTRWAVSSSTHLSNKIK*KIPIVYRNNNSNCEICAFNSEGEIKI 441
           ++ R A   S   S + + +  +V  N+  NCE+C  N +GE+ +
Sbjct: 237 VDKRKAALESARASKRARKEQGVVEENHQENCEVC--NQDGELML 279


>AL032634-4|CAA21599.1|  500|Caenorhabditis elegans Hypothetical
           protein W01G7.5 protein.
          Length = 500

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 273 NAPPTLNTSSKVSSIVTTAAPPFKPKRITA 184
           N P T ++SSK +   TT   P  P+RIT+
Sbjct: 168 NTPRTTSSSSKTTINTTTTRIPSTPRRITS 197


>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
          Length = 1787

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 307 LNTRWAVSSSTHLSNKIK*KIPIVYRNNNSNCEICAFNSEGEIKI 441
           ++ R A   S   S + + +  +V  N+  NCE+C  N +GE+ +
Sbjct: 237 VDKRKAALESARASKRARKEQGVVEENHQENCEVC--NQDGELML 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,334,915
Number of Sequences: 27780
Number of extensions: 304850
Number of successful extensions: 653
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)