Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0515
         (714 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g43300.1 68416.m04570 guanine nucleotide exchange family prot...    30   1.8  
At5g16020.1 68418.m01873 stress protein-related contains weak si...    29   3.1  
At1g62530.1 68414.m07055 hypothetical protein                          29   4.0  
At4g37670.2 68417.m05327 GCN5-related N-acetyltransferase (GNAT)...    28   5.3  
At4g37670.1 68417.m05328 GCN5-related N-acetyltransferase (GNAT)...    28   5.3  
At2g22890.1 68415.m02717 expressed protein  ; expression support...    27   9.3  

>At3g43300.1 68416.m04570 guanine nucleotide exchange family protein
           similar to SP|Q9Y6D5 Brefeldin A-inhibited guanine
           nucleotide-exchange protein 2 {Homo sapiens}; contains
           Pfam profile PF01369: Sec7 domain
          Length = 1756

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = -2

Query: 446 IKILISPSELNAQISQFELLFR*TIGIFYFILLLRWVDELTAHL--VLSGYWS 294
           +K  +S + L A +SQ  ++F+   GIF  +LLLR+ D L   +   LS Y+S
Sbjct: 388 VKAYLSYALLRASVSQSSVIFQYASGIF-SVLLLRFRDSLKVSMDCYLSPYFS 439


>At5g16020.1 68418.m01873 stress protein-related contains weak
           similarity to Swiss-Prot:P18899 stress protein (DNA
           damage-responsive protein 48) (DDRP 48) (YP 75)
           (Flocculent specific protein) [Saccharomyces cerevisiae]
          Length = 641

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = +1

Query: 433 IKILM*AVLKFLLIFWKRKPL--**FNLYFNPIRI*RRKTYNINELIIQYSSHN 588
           I +L  A+++F  IFWK+K L    F+ + +  R+  RK+  I++ I +  + +
Sbjct: 451 IMVLFAALVRFCFIFWKKKKLQDRPFSTFLDKRRLLHRKSREIDKTITRLQNES 504


>At1g62530.1 68414.m07055 hypothetical protein
          Length = 282

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/67 (26%), Positives = 33/67 (49%)
 Frame = -2

Query: 581 EEYCIINSLILYVFLRQILIGLKYRLNYYKGFRFQNIKRNFSTAYIKILISPSELNAQIS 402
           EE C ++S  +Y F ++   G+K R    +G R +N ++      +   +S  E+   I+
Sbjct: 186 EELCCVSSKAIYDFSKKKEFGVKLR----RGRRMKNFQKEILPELVS--LSRHEIREDIN 239

Query: 401 QFELLFR 381
             E +FR
Sbjct: 240 LLETVFR 246


>At4g37670.2 68417.m05327 GCN5-related N-acetyltransferase (GNAT)
           family protein / amino acid kinase family protein
           similar to SP|P08205 from Escherichia coli ; contains
           Pfam profile PF00696: Amino acid kinase family
          Length = 613

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 536 RQILIGLKYRLNYYKGFRFQNIKRNFSTAYIKILISPSELNAQISQFE 393
           R  L+G     +YY  + F+  K NFS+   K  ++P++     S F+
Sbjct: 3   RGALVGSSSTSSYYVPYHFRQSKSNFSSFKPKNKLNPTQFRFNCSWFK 50


>At4g37670.1 68417.m05328 GCN5-related N-acetyltransferase (GNAT)
           family protein / amino acid kinase family protein
           similar to SP|P08205 from Escherichia coli ; contains
           Pfam profile PF00696: Amino acid kinase family
          Length = 543

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 536 RQILIGLKYRLNYYKGFRFQNIKRNFSTAYIKILISPSELNAQISQFE 393
           R  L+G     +YY  + F+  K NFS+   K  ++P++     S F+
Sbjct: 3   RGALVGSSSTSSYYVPYHFRQSKSNFSSFKPKNKLNPTQFRFNCSWFK 50


>At2g22890.1 68415.m02717 expressed protein  ; expression supported
           by MPSS
          Length = 279

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 703 VDSITKHSTPYNGNIFVXSVVWINNKLD*VSVF 605
           +  +  H  PYN N  V S VW N  LD  +VF
Sbjct: 224 IHHMNHHRAPYNNNYCVVSGVW-NKVLDESNVF 255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,034,712
Number of Sequences: 28952
Number of extensions: 274654
Number of successful extensions: 541
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)