Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0514
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    29   0.66 
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    27   2.0  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.6  
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun...    27   3.5  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    27   3.5  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    26   4.6  

>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +1

Query: 103 KKMQKGKRKSD--EDGVSSPKKKKLNSSHE 186
           KK +K KRKS+  EDG S  KKKK   S +
Sbjct: 479 KKHKKSKRKSEESEDGESPKKKKKSKKSKD 508


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 521 ELHNMLKGPYKSIALTHDLSRVIPVLLKHSLKXLLNGITKEL 646
           EL ++++   K +   HD+SRV+   +K   K     I  EL
Sbjct: 157 ELFDLIRTNVKQLVFKHDMSRVVQTCVKFGSKQQRETICAEL 198


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = -3

Query: 532 IVQFFTGVILKSDFTTFL---CIXAANNLALCEISNTSAVILALRLTV 398
           IV F TG++ K DF  FL    + A   +AL ++ ++S ++  + L +
Sbjct: 696 IVFFGTGLLTKEDFNNFLWTVIVLAMGGVALGKVVSSSGLLELIALKI 743


>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
           Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 251

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +1

Query: 103 KKMQKGKR-KSDEDGVSSPKKKKLNSSHEQD 192
           K+++KGKR K DE+    PKKKK   S +++
Sbjct: 221 KELKKGKREKKDEE--EKPKKKKQKKSSKKE 249


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 100 SKKMQKGKRKSDEDGVSSPKKKK 168
           +K+    KRKSDE+ + S KK+K
Sbjct: 269 TKETASSKRKSDEESLPSQKKQK 291


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 249 GWVKGFKKFTKNDKGSKFVKTKEKSNFSKDEAN 347
           G +K  KKF   D     +KTK    FSKD A+
Sbjct: 62  GKLKKTKKFIAFDLDGTLIKTKSGRVFSKDAAD 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,167,147
Number of Sequences: 5004
Number of extensions: 33760
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)