Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0514
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0134 - 8681176-8681193,8681452-8681987,8682028-8682544           29   3.6  
01_06_1250 + 35726115-35726255,35727435-35727479,35728570-357286...    28   6.4  

>11_02_0134 - 8681176-8681193,8681452-8681987,8682028-8682544
          Length = 356

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 506 NNSCKELHNMLKGPYKSIALTHDLSRVIPVL 598
           NN C  LH+ ++G +K++AL  +L R  P L
Sbjct: 80  NNECNALHHAIRGGHKALAL--ELIRTQPAL 108


>01_06_1250 +
           35726115-35726255,35727435-35727479,35728570-35728692,
           35728804-35728911,35729247-35729360,35729440-35729613,
           35729881-35729976,35730165-35730272,35730389-35730496,
           35730595-35730743,35731255-35731408,35732487-35732647,
           35733739-35733945,35733968-35734025,35734058-35734222,
           35734305-35734388,35735670-35735863,35735952-35736011,
           35736203-35736407
          Length = 817

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = -2

Query: 533 YCAILYRSYFEVRFHNF--SLYXC 468
           YC ++Y  +F V FH F  S Y C
Sbjct: 465 YCGLIYNEFFSVPFHIFGKSAYEC 488


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,596,647
Number of Sequences: 37544
Number of extensions: 178590
Number of successful extensions: 480
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)