Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0514
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52444| Best HMM Match : Copine (HMM E-Value=3.9e-16)                30   1.6  
SB_39782| Best HMM Match : Chromo_shadow (HMM E-Value=1.4e-23)         29   4.9  

>SB_52444| Best HMM Match : Copine (HMM E-Value=3.9e-16)
          Length = 356

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 639 FVIPFNNXFRLCFSRTG-ITRLRSCVRAIDLYGPFNI 532
           F + FN+    C    G I   + CVR + LYGP NI
Sbjct: 173 FALNFNHTNPFCAGLQGLIEAYQQCVRQVTLYGPTNI 209


>SB_39782| Best HMM Match : Chromo_shadow (HMM E-Value=1.4e-23)
          Length = 226

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 94  FSSKKMQKGKRK--SDEDGVSSPKKKKLNSSHE 186
           +  KK    KRK  + E G S PKK+K+N+  E
Sbjct: 74  YEKKKKASSKRKDSTSEKGESKPKKRKVNAYEE 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,087,608
Number of Sequences: 59808
Number of extensions: 227153
Number of successful extensions: 589
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)