Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0513
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_1063 - 22628642-22628716,22628806-22629012,22629325-226294... 29 2.5
07_01_0893 + 7484598-7484744,7484837-7484902,7494387-7494530,749... 29 2.5
04_03_0256 - 13564070-13564456,13564543-13565299,13565734-135665... 29 2.5
11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717 29 3.3
11_04_0277 + 15698160-15698271,15698527-15698927 29 4.3
09_06_0183 - 21406474-21406636,21407412-21407956 29 4.3
12_02_0121 + 13919496-13919734,13919821-13919982,13920102-13920534 28 5.7
04_03_0999 - 21600231-21600788,21600896-21601056,21601149-216012... 28 5.7
11_01_0450 - 3487464-3487844,3487883-3488268,3488883-3489033,348... 28 7.5
09_04_0163 - 15249816-15249920,15250032-15250163,15250463-152506... 28 7.5
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004... 28 7.5
03_06_0120 + 31804301-31804412,31804525-31804631,31804714-318047... 28 7.5
03_02_0522 + 9103357-9103437,9103538-9103592,9103687-9103739,910... 28 7.5
02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964... 28 7.5
07_03_0439 + 18212584-18213065,18214164-18215010 27 9.9
03_05_0908 + 28686855-28687328 27 9.9
03_05_0657 - 26506423-26506832,26507163-26507721 27 9.9
>10_08_1063 -
22628642-22628716,22628806-22629012,22629325-22629433,
22629547-22629657,22630466-22630513,22630636-22630713,
22632151-22632254,22632360-22632470,22632555-22632791
Length = 359
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 410 PLARGVPLQPLPHRVPVQGDGGQGLRHPVQPSRR 511
P+ RG Q PH++ + D G G+++P P+++
Sbjct: 322 PMQRGAGAQSHPHQLRRKADQGMGMQNPGYPTQQ 355
>07_01_0893 +
7484598-7484744,7484837-7484902,7494387-7494530,
7494860-7495235,7495904-7496017,7496282-7496454,
7496562-7496669,7497311-7497377,7497791-7497904,
7498121-7498257,7498727-7498813,7498962-7498986,
7499044-7499266,7499770-7499947,7500039-7500152,
7500249-7500380,7500488-7500588,7500720-7500933
Length = 839
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 10 SARKAATMVDAATLEKLEAG-FSKLQGSDSKSLLKKYLTREVFDSLKNKKTSFGSTLLDC 186
S K + + + +++ + G F K D S + K+ TRE+ D+ K + +LDC
Sbjct: 94 SVWKGGMIKEYSKMDECKTGDFGKRPLIDDISTVCKWFTRELSDTTYGKNAQLAAKVLDC 153
Query: 187 I 189
+
Sbjct: 154 V 154
>04_03_0256 -
13564070-13564456,13564543-13565299,13565734-13566535,
13566884-13566917
Length = 659
Score = 29.5 bits (63), Expect = 2.5
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Frame = -3
Query: 577 RRMSCCWVSFDMP----VRW*NVPLSSPRRLDRVPETLSSISLYWDSVRQGLKGYPSSER 410
+R W SFD P V ++ + + P + +Y ++ G+ GY S
Sbjct: 164 QRNGTVWQSFDHPTDALVPGQSLLQGMILKANTSPTNWTESKIYITILQDGVYGYVESTP 223
Query: 409 PQRTRVETTNSPAGSRLPSVSTSPQFLGGCLSVFLK 302
PQ ++ R+P+ T F GC S+F++
Sbjct: 224 PQLYYNYVVSTNKSKRVPTTVT---FTNGCFSIFVQ 256
>11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717
Length = 1055
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -2
Query: 170 DPNEVFLFFRLSNTSLVRYFFSSDLE-SDPWSLLKPASNFSRVAASTIVAAFLA 12
D +++ L + LV YF+ SD SLL SNF+R+A+ + ++ F++
Sbjct: 139 DASKLALKHTRAGAPLVAYFWDKTFAWSDASSLLPFCSNFTRLASQSTMSGFVS 192
>11_04_0277 + 15698160-15698271,15698527-15698927
Length = 170
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 530 PSHRHVEGDPAAAHSTTTSLFKEGDRFPAG 619
PS + V+G AAA + TS F+ PAG
Sbjct: 9 PSSKEVQGGQAAAAAAETSYFRSAPVLPAG 38
>09_06_0183 - 21406474-21406636,21407412-21407956
Length = 235
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Frame = +2
Query: 437 PLPHRVPVQGDGGQ-----GLRHPVQPSRRAQGHVLPSHRHVEGDPAAAHSTTTSLFKEG 601
P+ H P +G+ G+ +R P + R +G + + VE + + S T +
Sbjct: 160 PVGHAAP-RGERGEVVVATRIRRPRKRRREKKGRRMQEEKRVEASGSFSRSLATQVGPSP 218
Query: 602 DRFPAGRQR 628
DR+P R R
Sbjct: 219 DRWPQSRNR 227
>12_02_0121 + 13919496-13919734,13919821-13919982,13920102-13920534
Length = 277
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/69 (30%), Positives = 28/69 (40%)
Frame = +2
Query: 437 PLPHRVPVQGDGGQGLRHPVQPSRRAQGHVLPSHRHVEGDPAAAHSTTTSLFKEGDRFPA 616
P P R + GQ R + SRR QG L + + +GD A + L G FP
Sbjct: 50 PSPPRSGRKRGAGQRRRRTEEESRRPQGEGLWIYHYEDGDVAYENDFHRPLCTSG-HFPR 108
Query: 617 GRQRLAAFW 643
+ A W
Sbjct: 109 LEKLFMAAW 117
>04_03_0999 -
21600231-21600788,21600896-21601056,21601149-21601241,
21601379-21601531,21601917-21601992,21602078-21602197,
21602348-21602597,21602917-21603008,21603408-21603581
Length = 558
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 415 ERPQRTRVETTNSPAGSRLPSVSTSPQFLGGCLSVF 308
+RP+ +RV T +R+P + +++ G LS F
Sbjct: 36 KRPRSSRVAQTRPQPEARIPGTQSDSEYMSGQLSAF 71
>11_01_0450 -
3487464-3487844,3487883-3488268,3488883-3489033,
3489132-3491102,3492090-3492149,3492240-3492436,
3492678-3492963
Length = 1143
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +2
Query: 428 PLQPLPHRVPVQGDGGQGLRHPVQPSRRAQGHVLPSHRHV 547
P PLP +G GG+ PV R + HVL H V
Sbjct: 33 PPSPLPVEEAARGRGGEEEDPPVMFGRHPECHVLVDHPSV 72
>09_04_0163 -
15249816-15249920,15250032-15250163,15250463-15250629,
15251259-15251448,15252530-15252661,15253275-15253382,
15253513-15253608,15253702-15253809,15253917-15254089,
15255026-15255401,15255887-15256030,15256125-15256799,
15256917-15256982,15257082-15257249
Length = 879
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 10 SARKAATMVDAATLEKLEAG-FSKLQGSDSKSLLKKYLTREVFDSLKNKKTSFGSTLLDC 186
S K + + + +++ + G F K D S + K+ TRE D+ K + +LDC
Sbjct: 326 SVWKGGMIKEYSKIDECKTGDFGKRPLIDDISTVCKWFTREHSDTTYGKNAQLAAKVLDC 385
Query: 187 I 189
+
Sbjct: 386 V 386
>04_04_0824 -
28399144-28399385,28400193-28400312,28400422-28400453,
28400531-28400625,28400713-28400786,28400883-28401018,
28401096-28401333,28401508-28401555,28401593-28401780,
28401862-28401983,28402061-28402226,28402321-28402443,
28403068-28403139,28403244-28403351,28404212-28404328,
28404458-28404596,28404702-28404808,28404904-28405013,
28405141-28405274,28405348-28405497,28405571-28405791,
28405868-28406677,28410261-28410473
Length = 1254
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +2
Query: 461 QGDGGQGLRHPVQPSRRAQGHVLPSHRHVEGDP 559
QG GGQG HP QG P H G P
Sbjct: 145 QGRGGQGSHHPGGGPPEYQGRGGPGSHHPGGGP 177
>03_06_0120 +
31804301-31804412,31804525-31804631,31804714-31804756,
31806069-31806187
Length = 126
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +1
Query: 511 SSRARSTISQACRRRPSSSSFDD 579
++RA++T + A RRR SSS+ DD
Sbjct: 14 AARAKATAAPAARRRMSSSAHDD 36
>03_02_0522 +
9103357-9103437,9103538-9103592,9103687-9103739,
9103832-9104060,9104149-9104284,9104448-9104496,
9105123-9105248,9106003-9106110,9106255-9106395
Length = 325
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = -2
Query: 422 LERAAAAHAGGDHELAGGVEVAERVHVSPVLGRVLVGLLEAIVVVLDDRVKQLGEHEYDS 243
L+ A AHA + G E+ RVHV P + G L+++ + L ++ + +YD+
Sbjct: 86 LQAQAQAHAAAANGFLGHTEL--RVHVPPTIALATRGRLQSLRLQLALLDREFDDLDYDA 143
>02_02_0704 +
13095449-13095584,13095671-13095990,13096102-13096423,
13096556-13096632,13096744-13097127
Length = 412
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 224 PTPESKFSTPDWMQS 180
P PE+K TPDW+QS
Sbjct: 117 PPPEAKKVTPDWLQS 131
>07_03_0439 + 18212584-18213065,18214164-18215010
Length = 442
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = -3
Query: 472 SISLYWDSVRQGLKGYPSSERPQRTRVETTNSPAGSRLPSVST 344
++S +WD+ +G ++ P R +TN P+ + + T
Sbjct: 29 TVSTHWDAASHEARGAAAASSPTSPRAASTNPPSATSAEPLHT 71
>03_05_0908 + 28686855-28687328
Length = 157
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 27 NNGRRRNPREIGGWFQQAPG 86
++G R +PRE+ GWF A G
Sbjct: 26 SHGARPSPRELQGWFAAAAG 45
>03_05_0657 - 26506423-26506832,26507163-26507721
Length = 322
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 649 GGPESCKALAACRKAVALLEQGSGRRMSC 563
GG +C +AACR+ + L G +R C
Sbjct: 37 GGGGACCPVAACRRLLRLCNHGFKKRRGC 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.129 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,930,595
Number of Sequences: 37544
Number of extensions: 427407
Number of successful extensions: 1817
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1817
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -