Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0513
         (657 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39690.1 68415.m04869 expressed protein contains Pfam profile...    33   0.22 
At4g30710.2 68417.m04353 expressed protein contains Pfam domain,...    30   1.6  
At4g30710.1 68417.m04352 expressed protein contains Pfam domain,...    30   1.6  
At1g18420.1 68414.m02300 expressed protein contains Pfam profile...    30   1.6  
At5g24910.1 68418.m02949 cytochrome P450 family protein similar ...    29   2.7  
At4g38890.1 68417.m05508 dihydrouridine synthase family protein ...    28   4.8  
At4g36910.1 68417.m05232 CBS domain-containing protein contains ...    28   6.3  
At1g24706.1 68414.m03104 expressed protein                             27   8.3  

>At2g39690.1 68415.m04869 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547
          Length = 498

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
 Frame = +3

Query: 378 EFVVSTRVRCGRSLEGYPFNPCLTESQYKEMEDKVSGTLSSLRGELKGTFYHLTGMSKET 557
           EF   TR++ GR  +G      L E++ K+  ++VS  L +    L G +  L  +S +T
Sbjct: 150 EFDGVTRMQMGRVRKGLR----LVEAKTKDDPNEVSEQLINC---LIGIYLELNHVSSKT 202

Query: 558 QQQ--LIRRPLPCSRRATAFLQAANALQL 638
           +    L RRP  CSR++  +    NA+ L
Sbjct: 203 KGDVSLSRRPSSCSRKSNTYSYYQNAMNL 231


>At4g30710.2 68417.m04353 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = +2

Query: 17  EKPQQWSTPQPSRNWRLVSASSRDPTLSRC*RSTLPGKYSTA*RTKRPHSDPPSLTA 187
           E   ++ +P P++N R  S S   PT+S   +S +  K + +   KRP S PPS T+
Sbjct: 31  EVSSRYRSPTPTKNGRCPSPSVTRPTVSSSSQS-VAAKRAVSAERKRP-STPPSPTS 85


>At4g30710.1 68417.m04352 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = +2

Query: 17  EKPQQWSTPQPSRNWRLVSASSRDPTLSRC*RSTLPGKYSTA*RTKRPHSDPPSLTA 187
           E   ++ +P P++N R  S S   PT+S   +S +  K + +   KRP S PPS T+
Sbjct: 31  EVSSRYRSPTPTKNGRCPSPSVTRPTVSSSSQS-VAAKRAVSAERKRP-STPPSPTS 85


>At1g18420.1 68414.m02300 expressed protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 581

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +3

Query: 294 HNGFKKTDKHPPKNWGDVDTLGNLDPA 374
           H    +    PPKNW DV T  NL  A
Sbjct: 470 HKSQSEATLRPPKNWDDVTTAANLSSA 496


>At5g24910.1 68418.m02949 cytochrome P450 family protein similar to
           Cytochrome P450 72A1 (SP:Q05047) [Catharanthus roseus];
           similar to fatty acid omega-hydroxylase cytochrome P450
           4A11 - Homo sapiens, PIR:I53015; supported by cDNA:
           gi_16604323_gb_AY058060.1_
          Length = 532

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 458 VQGDGGQGLRHPVQPSRRAQGHVLPSHRHVEGDPAAAHSTTTSLF 592
           V+G      R  V   ++ Q  ++ + +H  GD   AH  T+SLF
Sbjct: 47  VKGPPPSLFRGNVPEMQKIQSQIMSNSKHYSGDNIIAHDYTSSLF 91


>At4g38890.1 68417.m05508 dihydrouridine synthase family protein
           contains Pfam domain, PF01207: Dihydrouridine synthase
           (Dus)
          Length = 700

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 324 PPKNWG--DVDTLGNLDPAGEFVVSTRVRCGRSLEGYPFNPCLTESQYKEMED 476
           PP  +G  D++TL   + AG++V  + +  G+  EG+ F P    + Y   E+
Sbjct: 647 PPSYFGRDDLETLMMSESAGDWVRISEMLLGKVPEGFTFAPKHKSNAYDRAEN 699


>At4g36910.1 68417.m05232 CBS domain-containing protein contains
           Pfam profile PF00571: CBS domain
          Length = 236

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = -3

Query: 526 NVPLS-SPRRLDRVPETLSSISLYWDSVRQGLKGYPSSERPQRTRVETTNSPAGSRLPSV 350
           +VPLS +P R    P +   +   + SV+   K   S   P ++R+ + +S AGS L + 
Sbjct: 7   SVPLSFTPLRASSSPSSPYLLLPRFLSVQPCHKFTFSRSFPSKSRIPSASSAAGSTLMTN 66

Query: 349 STSPQ 335
           S+SP+
Sbjct: 67  SSSPR 71


>At1g24706.1 68414.m03104 expressed protein
          Length = 1781

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -3

Query: 502  RLDRVPETLSSISLYWDSVRQGLKGYPSSERPQRTRVETTNSPAG 368
            RLD         S + D  R   KGY   +R  R RV+ ++ P G
Sbjct: 1465 RLDLNKTVTDDQSTHRDQDRSKDKGYERQDRDHRERVDRSDKPRG 1509


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.129    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,923,171
Number of Sequences: 28952
Number of extensions: 288161
Number of successful extensions: 1103
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)