Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0509
         (406 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    58   4e-11
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    58   4e-11
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    53   9e-10
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    24   0.49 

>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 57.6 bits (133), Expect = 4e-11
 Identities = 27/30 (90%), Positives = 27/30 (90%)
 Frame = +1

Query: 256 INEPTAAAIAYGLDKKGTGERNVLIFDLGG 345
           INEPTAAAIAYGLDKK   ERNVLIFDLGG
Sbjct: 1   INEPTAAAIAYGLDKKAEKERNVLIFDLGG 30



 Score = 37.1 bits (82), Expect = 7e-05
 Identities = 16/20 (80%), Positives = 19/20 (95%)
 Frame = +2

Query: 347 GTFDVSILTIEDXIFEVKST 406
           GTFDVS+LTIE+ IFEVK+T
Sbjct: 31  GTFDVSLLTIEEGIFEVKAT 50


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 57.6 bits (133), Expect = 4e-11
 Identities = 27/30 (90%), Positives = 27/30 (90%)
 Frame = +1

Query: 256 INEPTAAAIAYGLDKKGTGERNVLIFDLGG 345
           INEPTAAAIAYGLDKK   ERNVLIFDLGG
Sbjct: 1   INEPTAAAIAYGLDKKAERERNVLIFDLGG 30



 Score = 37.1 bits (82), Expect = 7e-05
 Identities = 16/20 (80%), Positives = 19/20 (95%)
 Frame = +2

Query: 347 GTFDVSILTIEDXIFEVKST 406
           GTFDVS+LTIE+ IFEVK+T
Sbjct: 31  GTFDVSLLTIEEGIFEVKAT 50


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 53.2 bits (122), Expect = 9e-10
 Identities = 24/30 (80%), Positives = 28/30 (93%)
 Frame = +1

Query: 256 INEPTAAAIAYGLDKKGTGERNVLIFDLGG 345
           INEPTAAAIAYGLDKKG  E+N+L++DLGG
Sbjct: 1   INEPTAAAIAYGLDKKG-AEQNILVYDLGG 29



 Score = 33.1 bits (72), Expect = 0.001
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = +2

Query: 347 GTFDVSILTIEDXIFEVKST 406
           GTFDVSILTI++ +FEV +T
Sbjct: 30  GTFDVSILTIDNGVFEVVAT 49


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 24.2 bits (50), Expect = 0.49
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
 Frame = +1

Query: 85  PRGSQXHGAYENEGXCRSL---SWQNCA---ECSNHGSRVLQSLSKTSHXRCR 225
           P      GA+  EG C+S    ++ N +   EC N+G  V+   ++T+   CR
Sbjct: 11  PAAGFHFGAFTCEG-CKSFFGRTYNNISSISECKNNGECVINKKNRTACKACR 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,025
Number of Sequences: 336
Number of extensions: 1718
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8752267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)