Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0509
         (406 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   5.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.0  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
 Frame = -1

Query: 289 RKQSQQQSVH*CSEN----VQARDGTCIXCGLSLR 197
           R +  Q S   C E     VQ R+G+ I C +S R
Sbjct: 345 RARGNQPSTSECGEFRSVVVQKRNGSMIECNISPR 379


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 232 LWLERSPNINEPT 270
           LWL  SPN ++ T
Sbjct: 660 LWLNHSPNYDQVT 672


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 401 ISPRRYXPRW*GWTRR 354
           +  R Y PR+  WT R
Sbjct: 468 LQDREYCPRYIKWTNR 483


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,294
Number of Sequences: 438
Number of extensions: 2245
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)