Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0507
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo...    34   0.016
SPAC7D4.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   1.4  
SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...    26   5.8  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.6  

>SPBC16A3.06 |||tRNA specific adenosine deaminase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 34.3 bits (75), Expect = 0.016
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 558 IAVATGTKCVSGEHMSVR--GRAVNDCHAEVAARRCLQRHL 674
           + +ATG KC     +     G  ++DCHAE+ A RC  R L
Sbjct: 62  VCLATGVKCTPAGIIKNEQLGSVLHDCHAEILALRCFNRLL 102


>SPAC7D4.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 96

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 304 N*DYISFHLISFPIRFLVYYYSLTVN 227
           N D + F  I+ PIRFL++Y +   N
Sbjct: 52  NEDMVPFSAINLPIRFLIFYNAFRSN 77


>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 472 NFIVFVCWSPRVAPM 516
           N I+F+ WSP VAP+
Sbjct: 79  NKIIFISWSPDVAPI 93


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 254 EEPNWE*DEMK*NIISVNWCNFFSPHLCTFTDILNSFNKP 373
           EE N E  ++  +  SVN+ N  S  L TF+DI  + N P
Sbjct: 96  EESNAEKLKLDKDSSSVNYENQISKPLITFSDIHETVNVP 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,250,932
Number of Sequences: 5004
Number of extensions: 39640
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)