Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0507
(678 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1633 + 34928139-34928511,34928700-34928774,34929385-349294... 53 2e-07
10_01_0049 - 668482-669283,669596-670131,670235-670452,670554-67... 30 1.5
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 30 2.0
04_04_0655 + 26974366-26974398,26974480-26974899,26975023-26975859 29 2.6
08_01_0524 - 4560471-4560572,4560864-4560971,4561413-4561556,456... 29 3.4
10_08_0365 + 17224777-17224852,17224949-17224989,17225175-172252... 29 4.5
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335... 29 4.5
11_04_0191 - 14692104-14692484 28 6.0
04_03_0739 + 19180048-19182039 28 6.0
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 28 6.0
10_07_0133 + 13274190-13274317,13274533-13276371,13277064-132772... 28 7.9
08_02_0940 - 22822391-22822781,22822875-22823053,22823079-228234... 28 7.9
>04_04_1633 +
34928139-34928511,34928700-34928774,34929385-34929483,
34929736-34929908,34929990-34930066,34930182-34930301,
34930385-34930472,34930610-34930716,34930814-34930871
Length = 389
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/47 (51%), Positives = 32/47 (68%)
Frame = +3
Query: 537 DPRVLQVIAVATGTKCVSGEHMSVRGRAVNDCHAEVAARRCLQRHLY 677
DPR L V+++ATGTKC+ ++ G V+D HAEV ARR L R +Y
Sbjct: 63 DPRNLTVLSLATGTKCLGAARLNHHGDLVHDAHAEVVARRALLRLIY 109
>10_01_0049 -
668482-669283,669596-670131,670235-670452,670554-670653,
670706-670855
Length = 601
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 426 NHTASLLAFSPKSLF*FHCVCLLV 497
NH A+ A P SL F CVC+LV
Sbjct: 401 NHVAAAFALPPASLTTFTCVCILV 424
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +3
Query: 453 SPKSLF*FHCVCLLVPPRGPHGGRAVVTDPRVLQVIAVATGTKCVSG 593
SP S FH + L P G RA+V + +AV GT V G
Sbjct: 20 SPSSARPFHSLRLAAGPAGAAAARALVVADATKKAVAVLKGTSQVEG 66
>04_04_0655 + 26974366-26974398,26974480-26974899,26975023-26975859
Length = 429
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = -3
Query: 661 RQRRAATSAWQSLTARPRTDMCSPETHLVPVATAITCSTRGSVTTARP----PWGPRGGT 494
R +R+ +AW A P +D S + T +CS+ S ++ P W P GGT
Sbjct: 235 RSKRSRATAWSLSGAPPFSDSTSSSS----TTTTSSCSSSASFSSFSPLLKFEWHPLGGT 290
Query: 493 S 491
S
Sbjct: 291 S 291
>08_01_0524 -
4560471-4560572,4560864-4560971,4561413-4561556,
4561655-4561747,4561906-4561968,4562086-4562133,
4562677-4562835,4563251-4563589
Length = 351
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 614 AAHRHVLAGDALGARRHRYHLQHSRVSDDSPPPMG 510
A RH +AG AL ++ H + +H + +PPP+G
Sbjct: 15 AWRRHAVAGGAL-SQHHHHQQRHLVLRPPAPPPIG 48
>10_08_0365 +
17224777-17224852,17224949-17224989,17225175-17225244,
17225338-17225486,17225940-17226035,17226481-17226551,
17227077-17227138,17227311-17227374,17227463-17227547,
17227631-17227757,17228241-17228374,17228808-17229122
Length = 429
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 575 ARRHRYHLQHSRVSDDSPPP 516
A+RH +H HS +DD PP
Sbjct: 388 AQRHHHHHHHSAAADDRSPP 407
>09_04_0247 + 16030543-16031324,16032812-16033088,16033374-16033559,
16033714-16033866,16034277-16034702,16035922-16037668,
16037687-16038183,16038519-16038709,16038786-16038941,
16040077-16040311,16040416-16040723,16041279-16041439,
16041852-16041895,16041975-16042067
Length = 1751
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 451 FRQKVFFNFIVFVCWSPRVAPM 516
F++ + F+F+VFV WSP V P+
Sbjct: 1470 FQRIMGFSFMVFVLWSPVVIPL 1491
>11_04_0191 - 14692104-14692484
Length = 126
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 667 RWRQRRAATSAWQSLTARPRTDMCSPETHLVP 572
RWRQRR+ + W+S R +M + P
Sbjct: 24 RWRQRRSRPTRWRSTELRDGVEMAHGDERRTP 55
>04_03_0739 + 19180048-19182039
Length = 663
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = -3
Query: 673 RWRWRQR-RAATSAWQSLTARPRTDMCSPETHLVPVATAITCSTRGSVTTARPPWGPRGG 497
R R R R R +A + RP + CS L ATA T + + R P G R G
Sbjct: 28 RRRDRDRPRVDAAACTRDSRRPTRERCSTTVSLAATATATTATPVRAPVRTRAPMGQRKG 87
>01_05_0439 -
22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = -3
Query: 340 SAQMWGKKITPIN*DYISFHLISFPI----RFLVYYYSLTVNN*KN*L*KSYYLTLANAQ 173
SA+M+ K + DY+ HL+S P+ RF Y+ + N N + Y+TL AQ
Sbjct: 684 SAEMYKKDPNNVQ-DYVQRHLLSLPVWEELRFWDGYFEYLMENCSN--KSTNYVTLVTAQ 740
Query: 172 TV 167
+
Sbjct: 741 LI 742
>10_07_0133 +
13274190-13274317,13274533-13276371,13277064-13277253,
13277442-13277657
Length = 790
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -1
Query: 351 ISVKVHKCGEKKLHQLTEIIFH 286
I+++ C E+K+HQ+ +IFH
Sbjct: 549 ITIETSTCFEQKMHQIRALIFH 570
>08_02_0940 -
22822391-22822781,22822875-22823053,22823079-22823428,
22823522-22823765
Length = 387
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -3
Query: 649 AATSAWQSLTARPRTDMCSPETHLVPVATAITCSTRGSVTTARPPWGP 506
AATS + TA RT + SPE H A+ + G TA P P
Sbjct: 333 AATSPAAAPTAAARTAVASPEPHRPSSFAALFAAPLGFPLTAAQPRPP 380
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,280,043
Number of Sequences: 37544
Number of extensions: 276670
Number of successful extensions: 917
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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