Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0507
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00037-1|AAA50661.2|  495|Caenorhabditis elegans Adenosine deami...    46   2e-05
AF051275-1|AAC25097.1|  495|Caenorhabditis elegans putative RNA ...    46   2e-05
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    33   0.25 
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    29   4.0  
AF039710-4|AAD32273.1|  347|Caenorhabditis elegans Serpentine re...    28   7.0  

>U00037-1|AAA50661.2|  495|Caenorhabditis elegans Adenosine
           deaminase that acts onrna protein 2 protein.
          Length = 495

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 22/43 (51%), Positives = 30/43 (69%)
 Frame = +3

Query: 549 LQVIAVATGTKCVSGEHMSVRGRAVNDCHAEVAARRCLQRHLY 677
           LQ+IA++TG K + G+ +   G A+ DCHAE+ ARR L R LY
Sbjct: 163 LQIIALSTGNKGLRGDKIVNDGTALIDCHAEILARRGLLRFLY 205


>AF051275-1|AAC25097.1|  495|Caenorhabditis elegans putative RNA
           adenosine deaminase protein.
          Length = 495

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 22/43 (51%), Positives = 30/43 (69%)
 Frame = +3

Query: 549 LQVIAVATGTKCVSGEHMSVRGRAVNDCHAEVAARRCLQRHLY 677
           LQ+IA++TG K + G+ +   G A+ DCHAE+ ARR L R LY
Sbjct: 163 LQIIALSTGNKGLRGDKIVNDGTALIDCHAEILARRGLLRFLY 205


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
            protein T19D12.1 protein.
          Length = 1844

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 20/39 (51%), Positives = 21/39 (53%)
 Frame = -3

Query: 622  TARPRTDMCSPETHLVPVATAITCSTRGSVTTARPPWGP 506
            TA P T    P T  VPV T I  +TR  VTT RP  GP
Sbjct: 1210 TAAPSTSTAVPTT-TVPVTTTIATTTR--VTTVRPTVGP 1245


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = -3

Query: 649  AATSAWQSLTARPRTDMCSPETHLVPVATAITCSTRGSVTTARPPWGPRGGTSKQTQ 479
            AA  +   +TA+  T M S   H+VPVA  +   T  ++    PP  P   TS Q+Q
Sbjct: 1090 AAVQSQHPMTAQSVTPMAS---HIVPVAAPVPVPTPFTIPPPVPP-PPPTATSTQSQ 1142


>AF039710-4|AAD32273.1|  347|Caenorhabditis elegans Serpentine
           receptor, class h protein99 protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 114 VYYITLAPSTLLSVVITIPARTFLFECMTSFFIISL 7
           +YY+ +APS L+S+      +TFL   +  F I S+
Sbjct: 235 IYYLYIAPSDLISLETQKKQKTFLRNVILQFSIPSI 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,860,054
Number of Sequences: 27780
Number of extensions: 235470
Number of successful extensions: 577
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)