Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0507
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01760.1 68414.m00095 adenosine-deaminase family / editase fa...    56   2e-08
At5g35670.1 68418.m04261 calmodulin-binding family protein conta...    28   6.5  
At3g45410.1 68416.m04902 lectin protein kinase family protein co...    27   8.6  

>At1g01760.1 68414.m00095 adenosine-deaminase family / editase
           family similar to double-stranded RNA-specific editase
           GB:AAF69673 GI:7770275 from [Danio rerio]
          Length = 325

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 27/42 (64%), Positives = 30/42 (71%)
 Frame = +3

Query: 552 QVIAVATGTKCVSGEHMSVRGRAVNDCHAEVAARRCLQRHLY 677
           +VIA+ TGTKCVSG  +S RG  VND HAEV ARR L R  Y
Sbjct: 47  KVIALGTGTKCVSGSLLSPRGDIVNDSHAEVVARRALIRFFY 88


>At5g35670.1 68418.m04261 calmodulin-binding family protein contains
           IQ calmodulin-binding motif, Pfam:PF00612
          Length = 442

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 670 WRWRQRRAATSAWQSLTARPRTDMCSPETHLV 575
           W W +R  AT    S+   PRTD+ +    L+
Sbjct: 303 WSWLERWMATRVPDSIPIEPRTDVATKNQSLI 334


>At3g45410.1 68416.m04902 lectin protein kinase family protein
           contains Pfam profiles: PF00069 protein kinase domain,
           PF00138 legume lectins alpha domain, PF00139 legume
           lectins beta domain
          Length = 664

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = +3

Query: 450 FSPKSLF*F--HCVCLLVPPR-GPHGGRAVV 533
           F P S   F  H VC LVPP+ G  GG  +V
Sbjct: 72  FDPSSSLSFYTHFVCALVPPKLGADGGHGIV 102


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,936,557
Number of Sequences: 28952
Number of extensions: 210333
Number of successful extensions: 519
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)