Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0501
         (556 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         25   0.33 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   3.1  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   3.1  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   3.1  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   4.1  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   4.1  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   4.1  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   4.1  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   4.1  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   4.1  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   4.1  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   5.5  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 245 SRGSFKRRRAFPPRHHSARLERNTVRXRYYRPRTASXXPSK 123
           SRG   + R+   R      E  T R  YYRPRT+   P +
Sbjct: 206 SRGRHNQSRS--KRQPKTGREDQTRRNPYYRPRTSRTEPPR 244


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -1

Query: 112 MKVVVFQRRSRETISXLC 59
           +KV+ +QR S++ ++ LC
Sbjct: 237 IKVLGYQRHSKQNVALLC 254


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 310 ALFFDRCTAPVKLPAWQC 257
           +L+F  CTA  ++  W C
Sbjct: 223 SLWFINCTAKGRVAVWMC 240


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 310 ALFFDRCTAPVKLPAWQC 257
           +L+F  CTA  ++  W C
Sbjct: 223 SLWFINCTAKGRVAVWMC 240


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 279 SNSPPGSVPNRITREF*TATSVSA-TSPLCTLGTKHRAXPILSTA 148
           + +PP S P   T     AT  S  TSPL ++ T     P  STA
Sbjct: 119 NGAPPRSTPPLSTPSNSNATKSSGLTSPL-SVSTSPPGKPATSTA 162


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 279 SNSPPGSVPNRITREF*TATSVSA-TSPLCTLGTKHRAXPILSTA 148
           + +PP S P   T     AT  S  TSPL ++ T     P  STA
Sbjct: 119 NGAPPRSTPPLSTPSNSNATKSSGLTSPL-SVSTSPPGKPATSTA 162


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 279 SNSPPGSVPNRITREF*TATSVSA-TSPLCTLGTKHRAXPILSTA 148
           + +PP S P   T     AT  S  TSPL ++ T     P  STA
Sbjct: 119 NGAPPRSTPPLSTPSNSNATKSSGLTSPL-SVSTSPPGKPATSTA 162


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 279 SNSPPGSVPNRITREF*TATSVSA-TSPLCTLGTKHRAXPILSTA 148
           + +PP S P   T     AT  S  TSPL ++ T     P  STA
Sbjct: 119 NGAPPRSTPPLSTPSNSNATKSSGLTSPL-SVSTSPPGKPATSTA 162


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 279 SNSPPGSVPNRITREF*TATSVSA-TSPLCTLGTKHRAXPILSTA 148
           + +PP S P   T     AT  S  TSPL ++ T     P  STA
Sbjct: 75  NGAPPRSTPPLSTPSNSNATKSSGLTSPL-SVSTSPPGKPATSTA 118


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 279 SNSPPGSVPNRITREF*TATSVSA-TSPLCTLGTKHRAXPILSTA 148
           + +PP S P   T     AT  S  TSPL ++ T     P  STA
Sbjct: 119 NGAPPRSTPPLSTPSNSNATKSSGLTSPL-SVSTSPPGKPATSTA 162


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 279 SNSPPGSVPNRITREF*TATSVSA-TSPLCTLGTKHRAXPILSTA 148
           + +PP S P   T     AT  S  TSPL ++ T     P  STA
Sbjct: 119 NGAPPRSTPPLSTPSNSNATKSSGLTSPL-SVSTSPPGKPATSTA 162


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = -3

Query: 248 GSRGSFKRRRAFPPRHHSARLERNTVRXRYYRP 150
           G+ G  +RR     R   A  +R      +Y+P
Sbjct: 170 GTTGKLRRRSTAASRSRLAAFKRTIALGAFYQP 202


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,152
Number of Sequences: 336
Number of extensions: 2215
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13725787
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)