Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0501
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    28   0.80 
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    22   5.3  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   5.7  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   7.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.5  

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 289 YICQRITXVS*GQL--SEDRNLAWSKRAKAGLIQMFSTHRDCESTAY 423
           Y+C  +  +S G L  SED ++ W    K GLI+ F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 22.2 bits (45), Expect(2) = 5.3
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 297 TDVPPQSNSPP 265
           T++PP S+SPP
Sbjct: 747 TEIPPVSSSPP 757



 Score = 21.4 bits (43), Expect(2) = 5.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 288 PPQSNSPPGSVPNRITREF*TATSVS 211
           PP +++PP + P     E    TSV+
Sbjct: 756 PPHNDAPPKAKPISAPSELPNTTSVA 781


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 406  SPYAY*TSGSSQLLPFCSTRGF 341
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 322 LRTXALFFDRCTAPVKLPAWQCPEP 248
           LRT    +DRC  P+K   W   EP
Sbjct: 53  LRTKFNTYDRCIPPMKKSLWGWIEP 77


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 470  NFSGTSC*KLFILKDR*AVLSQSL 399
            N  G S  KLFI+KD   V+SQ L
Sbjct: 3491 NIGGRSPQKLFIVKDSGQVMSQDL 3514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,065,866
Number of Sequences: 5004
Number of extensions: 39024
Number of successful extensions: 86
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)