Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0501
         (556 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0272 - 23738514-23738817,23739382-23740748                       36   0.029
05_02_0028 - 5764980-5766374                                           30   1.4  
06_03_1035 + 27050104-27050422,27051975-27052519                       29   1.9  
01_06_1130 + 34740301-34740551,34740657-34741763,34741865-34742168     29   3.3  
04_04_0795 - 28111155-28111649,28111747-28112405,28112499-281126...    28   4.4  

>05_05_0272 - 23738514-23738817,23739382-23740748
          Length = 556

 Score = 35.5 bits (78), Expect = 0.029
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -2

Query: 318 GHXRYS-LTDVPPQSNSPPGSVPNRITREF*TATSVSATSPLCTLGTKH 175
           G  RY+ +TDVPP  N P   VPN IT EF T   +   +P  ++ + H
Sbjct: 398 GVFRYNQMTDVPPAVNGPLHVVPNVITAEFRTFIEIIFENPEKSMDSVH 446


>05_02_0028 - 5764980-5766374
          Length = 464

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 263 AVSRTGSRGSFKRRRAFPPRHHSA---RLERNTVRXRYYR 153
           AVS  G  G + R  + PP HHS    RL  NT+  R +R
Sbjct: 15  AVSGGGLSGLYSRASSSPPLHHSGSRRRLRTNTLPRRSWR 54


>06_03_1035 + 27050104-27050422,27051975-27052519
          Length = 287

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
 Frame = -1

Query: 319 RTXALFFDRCTAPVKLPAWQCPEPDHAGVLNGDERFRHVTTLHAWNETPCAXDIIDRAPL 140
           R   L  DR      L AW   +   A VL  D     + T+    E+P   + IDR  +
Sbjct: 97  RPVILLLDRGECYFALKAWNAQQAGAAAVLIADNVDEQLLTMDTPEESP-ETEYIDRISI 155

Query: 139 P---XNRVSNETMK 107
           P    NR   E++K
Sbjct: 156 PSALVNRAFGESLK 169


>01_06_1130 + 34740301-34740551,34740657-34741763,34741865-34742168
          Length = 553

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = -2

Query: 387 HLDQASFCPFAPREVSVLAELALGHXRYSLT-DVPPQSNSPPGSVPNRITREF*TATSVS 211
           H+D A      P +++     + G   Y+L  DVPP +  P    PN I+ EF T   V 
Sbjct: 376 HVDDAQ----TPLKLAEYFNASSGVFEYNLIGDVPPATTVPQKLAPNVISAEFRTFIEVV 431

Query: 210 ATSPLCTLGTKH 175
             +P  ++ + H
Sbjct: 432 FENPEKSIDSFH 443


>04_04_0795 -
           28111155-28111649,28111747-28112405,28112499-28112635,
           28112747-28113093
          Length = 545

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -2

Query: 300 LTDVPPQSNSPPGSVPNRITREF*TATSVSATSPLCTLGTKHRAXPI 160
           +T VPP    PP S P    +    A + S  SPL  +GT + A P+
Sbjct: 5   VTSVPPTPTPPPVSTPPSQIQS-PAAPASSRASPLRGMGTPNIASPV 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,336,581
Number of Sequences: 37544
Number of extensions: 297430
Number of successful extensions: 764
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)