Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0501
         (556 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03000.1 68415.m00252 zinc finger (C3HC4-type RING finger) fa...    30   1.2  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   2.1  
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi...    29   2.8  
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi...    28   4.8  
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc...    27   6.4  
At4g29570.1 68417.m04216 cytidine deaminase, putative / cytidine...    27   8.4  
At2g02500.1 68415.m00189 expressed protein contains Pfam profile...    27   8.4  
At1g77310.1 68414.m09004 wound-responsive protein, putative simi...    27   8.4  

>At2g03000.1 68415.m00252 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 535

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -3

Query: 275 TPRLAVSRTGSRGSFKRRRAFPPRHHSARLERNTVRXRYYRPRTASXXPS 126
           TPR+A +   S G F   R F  RH SA     + R R   P + +  PS
Sbjct: 44  TPRVAHTSMSSGGDFPDDRFFHARHQSATDRAASNRSRAIMPISTTNVPS 93


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 328 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 441
           LS  R   W  RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 952

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
 Frame = -2

Query: 363 PFAPREVSVLAELA-LGHXRYSLTDVPPQSNSPPGSVPN--RITREF*TATSVSATSPLC 193
           P  P   ++L   + +    +SL   PPQ   PP S P+  R  +   +++S S+ SP+ 
Sbjct: 13  PHFPYSATILRRHSPVASISFSLKQPPPQPPEPPESPPDLRRPEKSIGSSSSSSSPSPIP 72

Query: 192 TLGTKHRAXPILSTAHR 142
           +  T  +  P+    +R
Sbjct: 73  SPKTPLKINPLKGLTNR 89


>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
           like protein A, Arabidopsis thaliana, gb:Q07970
          Length = 790

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 154 DRAPLPXNRVSNETMKVVVFQRRSRET 74
           +RAPLP   V  E +  + F +R +ET
Sbjct: 7   NRAPLPSPNVKKEALSSIPFDKRRKET 33


>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein weak similarity to
           CARS-Cyp [Homo sapiens]  GI:1117968; contains Pfam
           profile PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 837

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 284 PSQTPRLAVSRTGSRGSFKRRRAFPPRHHSARLERNTVR 168
           P ++PR +VSR+  R S K     P R    R+ R+ VR
Sbjct: 563 PIRSPRKSVSRSPVRSSRKSVSRSPVRSSRRRISRSPVR 601


>At4g29570.1 68417.m04216 cytidine deaminase, putative / cytidine
           aminohydrolase, putative identical to cytidine deaminase
           homolog DesA [Arabidopsis thaliana] GI:4836443, cytidine
           deaminase 8 (CDA8) [Arabidopsis thaliana] GI:5080714;
           similar to cytidine deaminase (CDD) [Arabidopsis
           thaliana] GI:3046700; contains Pfam profile PF00383:
           Cytidine and deoxycytidylate deaminase zinc-binding
          Length = 293

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 408 AVPMR--TEHLDQASFCPFAPREVSVLAELALGHXRYSLTDVP 286
           A PMR    H++  S+  F P+ +S L   A+ H R  ++  P
Sbjct: 2   AQPMRFMLNHIETESYGAFTPQNLSPLINRAIPHTRAQISGSP 44


>At2g02500.1 68415.m00189 expressed protein contains Pfam profile:
           PF01128 uncharacterized protein family UPF0007;
           identical to GP:12697583 2-C-methyl-D-erythritol
           4-phosphate cytidyltransferase {Arabidopsis thaliana};
           identical to cDNA
           4-Diphosphocytidyl-2C-methyl-D-erythritol synthase
           (ISPD)  GI:7385140
          Length = 302

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 446 FSKRCQKSYHRDNWLXAAKRSSDVAF 523
           FSKR  +SY RD  L + K SS   F
Sbjct: 42  FSKRVNRSYKRDALLLSIKCSSSTGF 67


>At1g77310.1 68414.m09004 wound-responsive protein, putative similar
           to wound-responsive protein 14.05 (GI:16506638)
           [Castanea sativa]
          Length = 699

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = -2

Query: 432 KGSIGRAFAVPMRTEHLDQASFCPFAPREVSVLAELALG--HXRYSLTDVPPQSNSPPG- 262
           K   G    V    +H D+A+  P         A  + G  H + S   V  QSNSPPG 
Sbjct: 240 KAQNGNDSLVLENVKHTDKANHQPMNATSPKSKAAGSSGPLHPKCSSKSVHEQSNSPPGK 299

Query: 261 SVPN 250
           S PN
Sbjct: 300 SRPN 303


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,127,608
Number of Sequences: 28952
Number of extensions: 218288
Number of successful extensions: 595
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)