Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0500
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    35   0.004
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    28   0.44 
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    27   1.3  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    26   2.3  
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    25   4.1  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    24   9.4  

>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 35.1 bits (77), Expect = 0.004
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = +3

Query: 96  KDFVLEKILNNNTNRXTACVVGKFKDKSGVALILFEKNAFKXNXLSXE 239
           K+F  EKIL ++T      + GK +++  VAL+L EK AF  N +  +
Sbjct: 13  KEFKFEKILKDDTKSKIITLYGKIRNE--VALLLLEKTAFDLNTIKLD 58



 Score = 29.5 bits (63), Expect = 0.19
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +2

Query: 245 FLQKTQLXT---FFENXIYGNFXCFPXSTINGVKTTIIYPAXXKHIAKFS 385
           FLQ T+L      F   +  NF     ST+  VK+T+I+PA   H+ K+S
Sbjct: 63  FLQDTKLVENNDVFHWFLSTNFQ--DCSTLPSVKSTLIWPASETHVRKYS 110


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 28.3 bits (60), Expect = 0.44
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 287 IYGNFXCFPXSTINGVKTTIIYPAXXKHIAKFS 385
           +Y ++     S INGV  ++IYPA    I+K S
Sbjct: 35  VYRSYISSELSKINGVDVSLIYPALETSISKDS 67


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 102 FVLEKILNNNTNRXTACVVGKFKDKSGVALILFEKNAFKXNXLSXEGYFSK 254
           FVLE+ L  N    T    G+   K+GV L+   K  +  N  S E ++ K
Sbjct: 433 FVLERHLKKNQAIKTGKSCGRINTKNGVELVYPRK--YVSNGFSAEHWYRK 481


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 111 PKQSLSILTDCHLDCCRFHC 52
           P   LS+L D  + CC ++C
Sbjct: 139 PNTLLSLLNDEEISCCEYYC 158


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 217 LKAFFSNRISATPLLSLNFPTTQAVXLLVLLFNIFS 110
           +K FF     A+PL ++NFP   A+ +     N+FS
Sbjct: 269 MKKFFRFLCLASPLFTMNFP--MAIFMYWFPSNVFS 302


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 99  DFVLEKILNNNTNRXTACVVG 161
           DF+++ + NN     T C +G
Sbjct: 104 DFIIDTLRNNEPGTITICTIG 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,206,757
Number of Sequences: 5004
Number of extensions: 17775
Number of successful extensions: 32
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)