Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0497
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   112   4e-26
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    65   8e-12
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    62   5e-11
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    55   6e-09
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    42   8e-05
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    38   0.001
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    37   0.002
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    30   0.27 
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    27   2.5  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   3.3  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    26   4.4  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    26   4.4  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    25   7.7  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  112 bits (269), Expect = 4e-26
 Identities = 49/60 (81%), Positives = 56/60 (93%)
 Frame = +3

Query: 93  DEEVAALVVDNGSGMCKAGFAGEDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
           +EE+AALV+DNGSGMCKAGFAG+DAPRAVFPSIVGRPRH G+MVGMGQKDSYVG   ++K
Sbjct: 2   EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61



 Score =  103 bits (248), Expect = 1e-23
 Identities = 44/46 (95%), Positives = 45/46 (97%)
 Frame = +2

Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 391
           +EAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEH
Sbjct: 56  DEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEH 101



 Score = 76.2 bits (179), Expect = 3e-15
 Identities = 39/61 (63%), Positives = 41/61 (67%)
 Frame = +1

Query: 379 PRGTPVLLTEXPLNPKANREKMTQXMFEXFNTPAMYVAIQAVLCCTRSVVPXVFVLDFGD 558
           P   P LLTE PLNPK+NREKMTQ +FE FN PA YVAIQAVL    S      VLD GD
Sbjct: 98  PEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGD 157

Query: 559 G 561
           G
Sbjct: 158 G 158


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 64.9 bits (151), Expect = 8e-12
 Identities = 32/61 (52%), Positives = 39/61 (63%)
 Frame = +1

Query: 379 PRGTPVLLTEXPLNPKANREKMTQXMFEXFNTPAMYVAIQAVLCCTRSVVPXVFVLDFGD 558
           PRG  +LLTE P+NP ANREKM + MFE +    +YVAIQAVL      +    V+D GD
Sbjct: 98  PRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGD 157

Query: 559 G 561
           G
Sbjct: 158 G 158



 Score = 51.6 bits (118), Expect = 8e-08
 Identities = 17/56 (30%), Positives = 40/56 (71%)
 Frame = +2

Query: 215 RDGRYGTEGLLCRNEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 382
           + G    + ++  +EA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43  KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDP 98



 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +3

Query: 99  EVAALVVDNGSGMCKAGFAGEDAPRAVFPSIVGRP 203
           E A +V+DNG+G  K G+A ++ PR  FPSIVGRP
Sbjct: 2   ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 62.1 bits (144), Expect = 5e-11
 Identities = 26/48 (54%), Positives = 35/48 (72%)
 Frame = +3

Query: 111 LVVDNGSGMCKAGFAGEDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG 254
           + +DNGSG  KAGFAG+D P+ +FP+ VGR +H+ VM    QKD +VG
Sbjct: 12  ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVG 59



 Score = 56.0 bits (129), Expect = 4e-09
 Identities = 23/47 (48%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
 Frame = +2

Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEH 391
           +EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L   PEEH
Sbjct: 60  SEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEH 106



 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 24/61 (39%), Positives = 33/61 (54%)
 Frame = +1

Query: 379 PRGTPVLLTEXPLNPKANREKMTQXMFEXFNTPAMYVAIQAVLCCTRSVVPXVFVLDFGD 558
           P   P+LLTE PL    N+EK+ +  +E  N PA+  ++Q VL    S      VL+ GD
Sbjct: 103 PEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGD 162

Query: 559 G 561
           G
Sbjct: 163 G 163


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 55.2 bits (127), Expect = 6e-09
 Identities = 25/50 (50%), Positives = 29/50 (58%)
 Frame = +1

Query: 373 CRPRGTPVLLTEXPLNPKANREKMTQXMFEXFNTPAMYVAIQAVLCCTRS 522
           C P     LLTE PLNP  NRE   + MFE FN   +Y+A+QAVL    S
Sbjct: 119 CEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAAS 168



 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 254 NEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHQF 397
           N+A  K     +L YPI HG + NWD ME+ W  + +  LR  PE+H F
Sbjct: 78  NDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126



 Score = 42.3 bits (95), Expect = 5e-05
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
 Frame = +3

Query: 111 LVVDNGSGMCKAGFAGEDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGMR 260
           +++DNG+G  K G+AG DAP  VFP+++   R  G   G  +  K SY+  +
Sbjct: 8   IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 41.5 bits (93), Expect = 8e-05
 Identities = 17/34 (50%), Positives = 24/34 (70%)
 Frame = +3

Query: 96  EEVAALVVDNGSGMCKAGFAGEDAPRAVFPSIVG 197
           +EV+A+V+D GS   + GF+GED P+ V PS  G
Sbjct: 9   DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +1

Query: 340 DLASY-LLQ*AACRPRGTPVLLTEXPLNPKANREKMTQXMFEXFNTPAMYVAIQAVLCCT 516
           DL  Y L Q     P   P+L+TE   NP  NR K  + MFE    PA Y+A Q      
Sbjct: 82  DLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAF 141

Query: 517 RSVVPXVFVLDFG 555
            S      ++D G
Sbjct: 142 ASGKGTACLVDIG 154



 Score = 30.7 bits (66), Expect = 0.15
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 281 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 391
           + +K  I +G V NWD    +W +    +L+  P EH
Sbjct: 63  MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEH 99


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +3

Query: 96  EEVAALVVDNGSGMCKAGFAGEDAPRAVFPSIVG 197
           EE+ +LV+D GS   + G+AGE++P  + PS  G
Sbjct: 8   EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41



 Score = 35.5 bits (78), Expect = 0.005
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +1

Query: 379 PRGTPVLLTEXPLNPKANREKMTQXMFEXFNTPAMYVAIQAVLCCTRSVVPXVFVLDFG 555
           P    +++TE   NP++ R+++ +  FE  + PA Y+  QAV     +      ++D G
Sbjct: 99  PTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIG 157


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 16/32 (50%), Positives = 22/32 (68%)
 Frame = +3

Query: 111 LVVDNGSGMCKAGFAGEDAPRAVFPSIVGRPR 206
           LV+DNGS   +AG+ GE  P+ VF ++V R R
Sbjct: 27  LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58



 Score = 34.3 bits (75), Expect = 0.013
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 215 RDGRYGTEGLLCRNEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 391
           RD +      L  N+   + G  ++ + P E  +++NWD ME++  +TF  +L +   EH
Sbjct: 58  RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116

Query: 392 QFC 400
             C
Sbjct: 117 PIC 119



 Score = 32.7 bits (71), Expect = 0.038
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 391 PVLLTEXPLNPKANREKMTQXMFEXFNTPAMYVAIQAVLCCTRSVVP 531
           P+ +TE   NP   R  MT+ +FE +N P++   I  +     +  P
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKP 163


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = -2

Query: 253 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 92
           PT  S  P+ PT+ P     P    N     S P         PL+TTN  TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 296 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHQF 397
           PI+ G V +W+ ++  W H  Y+ L   P +  F
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTF 145


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 232 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 140
           P+PT  P    LPT   NT +    P+ PAL
Sbjct: 74  PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 366 SCVSPPRNTSSAH*GSPQPQGQQREDDP 449
           S V PPR  ++ H  SP+P G      P
Sbjct: 122 STVLPPRTENALHAASPKPSGSTGYTSP 149


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 252 LHKSPSVPYRPSRPDGGAFPRSRGTR 175
           + K+PS PY  SRP   A   S  TR
Sbjct: 310 ISKAPSYPYSSSRPSASASLASSPTR 335


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 333 MSSQLVTIPCSMGYLRVRIPLLLCASFLHKSPSVPYRPSR 214
           +SS   +IP    +L+  I + L + F  + PS+ Y+ SR
Sbjct: 157 VSSSFDSIPAIARFLQREIEVQLVSLFQEELPSIIYKMSR 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,272,495
Number of Sequences: 5004
Number of extensions: 46597
Number of successful extensions: 140
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)