BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0497 (563 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 112 4e-26 SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 65 8e-12 SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 62 5e-11 SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 55 6e-09 SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 42 8e-05 SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 38 0.001 SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 37 0.002 SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.27 SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 27 2.5 SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 3.3 SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 26 4.4 SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 4.4 SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc... 25 7.7 >SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2|||Manual Length = 375 Score = 112 bits (269), Expect = 4e-26 Identities = 49/60 (81%), Positives = 56/60 (93%) Frame = +3 Query: 93 DEEVAALVVDNGSGMCKAGFAGEDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272 +EE+AALV+DNGSGMCKAGFAG+DAPRAVFPSIVGRPRH G+MVGMGQKDSYVG ++K Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61 Score = 103 bits (248), Expect = 1e-23 Identities = 44/46 (95%), Positives = 45/46 (97%) Frame = +2 Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 391 +EAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEH Sbjct: 56 DEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEH 101 Score = 76.2 bits (179), Expect = 3e-15 Identities = 39/61 (63%), Positives = 41/61 (67%) Frame = +1 Query: 379 PRGTPVLLTEXPLNPKANREKMTQXMFEXFNTPAMYVAIQAVLCCTRSVVPXVFVLDFGD 558 P P LLTE PLNPK+NREKMTQ +FE FN PA YVAIQAVL S VLD GD Sbjct: 98 PEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGD 157 Query: 559 G 561 G Sbjct: 158 G 158 >SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 390 Score = 64.9 bits (151), Expect = 8e-12 Identities = 32/61 (52%), Positives = 39/61 (63%) Frame = +1 Query: 379 PRGTPVLLTEXPLNPKANREKMTQXMFEXFNTPAMYVAIQAVLCCTRSVVPXVFVLDFGD 558 PRG +LLTE P+NP ANREKM + MFE + +YVAIQAVL + V+D GD Sbjct: 98 PRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGD 157 Query: 559 G 561 G Sbjct: 158 G 158 Score = 51.6 bits (118), Expect = 8e-08 Identities = 17/56 (30%), Positives = 40/56 (71%) Frame = +2 Query: 215 RDGRYGTEGLLCRNEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 382 + G + ++ +EA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDP 98 Score = 46.4 bits (105), Expect = 3e-06 Identities = 20/35 (57%), Positives = 26/35 (74%) Frame = +3 Query: 99 EVAALVVDNGSGMCKAGFAGEDAPRAVFPSIVGRP 203 E A +V+DNG+G K G+A ++ PR FPSIVGRP Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36 >SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 62.1 bits (144), Expect = 5e-11 Identities = 26/48 (54%), Positives = 35/48 (72%) Frame = +3 Query: 111 LVVDNGSGMCKAGFAGEDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG 254 + +DNGSG KAGFAG+D P+ +FP+ VGR +H+ VM QKD +VG Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVG 59 Score = 56.0 bits (129), Expect = 4e-09 Identities = 23/47 (48%), Positives = 34/47 (72%), Gaps = 1/47 (2%) Frame = +2 Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEH 391 +EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEH Sbjct: 60 SEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEH 106 Score = 47.2 bits (107), Expect = 2e-06 Identities = 24/61 (39%), Positives = 33/61 (54%) Frame = +1 Query: 379 PRGTPVLLTEXPLNPKANREKMTQXMFEXFNTPAMYVAIQAVLCCTRSVVPXVFVLDFGD 558 P P+LLTE PL N+EK+ + +E N PA+ ++Q VL S VL+ GD Sbjct: 103 PEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGD 162 Query: 559 G 561 G Sbjct: 163 G 163 >SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces pombe|chr 1|||Manual Length = 427 Score = 55.2 bits (127), Expect = 6e-09 Identities = 25/50 (50%), Positives = 29/50 (58%) Frame = +1 Query: 373 CRPRGTPVLLTEXPLNPKANREKMTQXMFEXFNTPAMYVAIQAVLCCTRS 522 C P LLTE PLNP NRE + MFE FN +Y+A+QAVL S Sbjct: 119 CEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAAS 168 Score = 51.2 bits (117), Expect = 1e-07 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Frame = +2 Query: 254 NEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHQF 397 N+A K +L YPI HG + NWD ME+ W + + LR PE+H F Sbjct: 78 NDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126 Score = 42.3 bits (95), Expect = 5e-05 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%) Frame = +3 Query: 111 LVVDNGSGMCKAGFAGEDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGMR 260 +++DNG+G K G+AG DAP VFP+++ R G G + K SY+ + Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58 >SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces pombe|chr 2|||Manual Length = 433 Score = 41.5 bits (93), Expect = 8e-05 Identities = 17/34 (50%), Positives = 24/34 (70%) Frame = +3 Query: 96 EEVAALVVDNGSGMCKAGFAGEDAPRAVFPSIVG 197 +EV+A+V+D GS + GF+GED P+ V PS G Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42 Score = 37.9 bits (84), Expect = 0.001 Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 1/73 (1%) Frame = +1 Query: 340 DLASY-LLQ*AACRPRGTPVLLTEXPLNPKANREKMTQXMFEXFNTPAMYVAIQAVLCCT 516 DL Y L Q P P+L+TE NP NR K + MFE PA Y+A Q Sbjct: 82 DLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAF 141 Query: 517 RSVVPXVFVLDFG 555 S ++D G Sbjct: 142 ASGKGTACLVDIG 154 Score = 30.7 bits (66), Expect = 0.15 Identities = 12/37 (32%), Positives = 19/37 (51%) Frame = +2 Query: 281 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 391 + +K I +G V NWD +W + +L+ P EH Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEH 99 >SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 430 Score = 37.9 bits (84), Expect = 0.001 Identities = 15/34 (44%), Positives = 23/34 (67%) Frame = +3 Query: 96 EEVAALVVDNGSGMCKAGFAGEDAPRAVFPSIVG 197 EE+ +LV+D GS + G+AGE++P + PS G Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41 Score = 35.5 bits (78), Expect = 0.005 Identities = 16/59 (27%), Positives = 30/59 (50%) Frame = +1 Query: 379 PRGTPVLLTEXPLNPKANREKMTQXMFEXFNTPAMYVAIQAVLCCTRSVVPXVFVLDFG 555 P +++TE NP++ R+++ + FE + PA Y+ QAV + ++D G Sbjct: 99 PTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIG 157 >SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 721 Score = 37.1 bits (82), Expect = 0.002 Identities = 16/32 (50%), Positives = 22/32 (68%) Frame = +3 Query: 111 LVVDNGSGMCKAGFAGEDAPRAVFPSIVGRPR 206 LV+DNGS +AG+ GE P+ VF ++V R R Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58 Score = 34.3 bits (75), Expect = 0.013 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = +2 Query: 215 RDGRYGTEGLLCRNEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 391 RD + L N+ + G ++ + P E +++NWD ME++ +TF +L + EH Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116 Query: 392 QFC 400 C Sbjct: 117 PIC 119 Score = 32.7 bits (71), Expect = 0.038 Identities = 14/47 (29%), Positives = 23/47 (48%) Frame = +1 Query: 391 PVLLTEXPLNPKANREKMTQXMFEXFNTPAMYVAIQAVLCCTRSVVP 531 P+ +TE NP R MT+ +FE +N P++ I + + P Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKP 163 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 29.9 bits (64), Expect = 0.27 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Frame = -2 Query: 253 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 92 PT S P+ PT+ P P N S P PL+TTN TS+S Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455 >SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosaccharomyces pombe|chr 1|||Manual Length = 523 Score = 26.6 bits (56), Expect = 2.5 Identities = 11/34 (32%), Positives = 18/34 (52%) Frame = +2 Query: 296 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHQF 397 PI+ G V +W+ ++ W H Y+ L P + F Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTF 145 >SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual Length = 309 Score = 26.2 bits (55), Expect = 3.3 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -2 Query: 232 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 140 P+PT P LPT NT + P+ PAL Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101 >SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizosaccharomyces pombe|chr 3|||Manual Length = 650 Score = 25.8 bits (54), Expect = 4.4 Identities = 11/28 (39%), Positives = 14/28 (50%) Frame = +3 Query: 366 SCVSPPRNTSSAH*GSPQPQGQQREDDP 449 S V PPR ++ H SP+P G P Sbjct: 122 STVLPPRTENALHAASPKPSGSTGYTSP 149 >SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizosaccharomyces pombe|chr 1|||Manual Length = 927 Score = 25.8 bits (54), Expect = 4.4 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -3 Query: 252 LHKSPSVPYRPSRPDGGAFPRSRGTR 175 + K+PS PY SRP A S TR Sbjct: 310 ISKAPSYPYSSSRPSASASLASSPTR 335 >SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 452 Score = 25.0 bits (52), Expect = 7.7 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -3 Query: 333 MSSQLVTIPCSMGYLRVRIPLLLCASFLHKSPSVPYRPSR 214 +SS +IP +L+ I + L + F + PS+ Y+ SR Sbjct: 157 VSSSFDSIPAIARFLQREIEVQLVSLFQEELPSIIYKMSR 196 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,272,495 Number of Sequences: 5004 Number of extensions: 46597 Number of successful extensions: 140 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 117 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 139 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 238029836 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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