Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0495
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   2.5  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    26   5.9  
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   7.8  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 1/93 (1%)
 Frame = -2

Query: 640  PSNHRRTLERM*SASLCKFSICSLCTECVRFCESPSYVRARNHIGYVHAIANPSTLQTHI 461
            P+   ++ E      LC  S  ++    +R            +I  V  I NP T+   +
Sbjct: 1181 PNQQSKSTESKQQILLCAPSNAAVDEVLLRLKRGFLLENGEKYIPRVVRIGNPETINVSV 1240

Query: 460  LSFQFVRDVPRQLKKWNQGE-RAKSLRASNRWR 365
                      +QL + NQG     SL+   RWR
Sbjct: 1241 RDLSLEYQTEKQLLEVNQGAIDLGSLQELTRWR 1273


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -2

Query: 457 SFQFVRDVPRQLKKWNQGERAKSLRASNRWRILHIASCEII 335
           S++F  D+P QL +     +A   +  N W+    +S  I+
Sbjct: 760 SYRFNYDLPEQLSRLKCTSKANFAKKENAWKYTTTSSINIV 800


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = -3

Query: 357 TSHPVRSS*ADFGITGISSINVFTSAKSSPRTSASEQFFSVPVCRVGFCQSSRKNN 190
           T  P     A+   T ++++N  ++   SP+++ S    S+P   + F Q    NN
Sbjct: 274 TLRPPNPPAANGNATPVTAVNNVSAVADSPQSTGSSVSSSLPTLSLDFKQEYSGNN 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,555,187
Number of Sequences: 5004
Number of extensions: 75393
Number of successful extensions: 174
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)