BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0495 (848 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 27 2.5 SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 5.9 SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 7.8 >SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1687 Score = 27.5 bits (58), Expect = 2.5 Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 1/93 (1%) Frame = -2 Query: 640 PSNHRRTLERM*SASLCKFSICSLCTECVRFCESPSYVRARNHIGYVHAIANPSTLQTHI 461 P+ ++ E LC S ++ +R +I V I NP T+ + Sbjct: 1181 PNQQSKSTESKQQILLCAPSNAAVDEVLLRLKRGFLLENGEKYIPRVVRIGNPETINVSV 1240 Query: 460 LSFQFVRDVPRQLKKWNQGE-RAKSLRASNRWR 365 +QL + NQG SL+ RWR Sbjct: 1241 RDLSLEYQTEKQLLEVNQGAIDLGSLQELTRWR 1273 >SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Schizosaccharomyces pombe|chr 1|||Manual Length = 1480 Score = 26.2 bits (55), Expect = 5.9 Identities = 11/41 (26%), Positives = 20/41 (48%) Frame = -2 Query: 457 SFQFVRDVPRQLKKWNQGERAKSLRASNRWRILHIASCEII 335 S++F D+P QL + +A + N W+ +S I+ Sbjct: 760 SYRFNYDLPEQLSRLKCTSKANFAKKENAWKYTTTSSINIV 800 >SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 368 Score = 25.8 bits (54), Expect = 7.8 Identities = 14/56 (25%), Positives = 26/56 (46%) Frame = -3 Query: 357 TSHPVRSS*ADFGITGISSINVFTSAKSSPRTSASEQFFSVPVCRVGFCQSSRKNN 190 T P A+ T ++++N ++ SP+++ S S+P + F Q NN Sbjct: 274 TLRPPNPPAANGNATPVTAVNNVSAVADSPQSTGSSVSSSLPTLSLDFKQEYSGNN 329 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,555,187 Number of Sequences: 5004 Number of extensions: 75393 Number of successful extensions: 174 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 170 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 174 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 420459900 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -