Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0495
(848 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17799| Best HMM Match : CBM_21 (HMM E-Value=4.8e-34) 64 2e-10
SB_17798| Best HMM Match : CBM_21 (HMM E-Value=2.4e-29) 52 8e-07
SB_54609| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_17796| Best HMM Match : CBM_21 (HMM E-Value=2.1e-23) 46 4e-05
SB_22407| Best HMM Match : CBM_21 (HMM E-Value=5.1e-05) 45 9e-05
SB_3025| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_3023| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_24987| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_35065| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_17862| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17) 29 4.8
SB_49473| Best HMM Match : UPF0081 (HMM E-Value=3.7) 29 6.3
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_17799| Best HMM Match : CBM_21 (HMM E-Value=4.8e-34)
Length = 218
Score = 63.7 bits (148), Expect = 2e-10
Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Frame = +1
Query: 499 ARN-LCGSVRVRNLDFHKTVHIRYTMNRWRTYTDLQTTYVQGSCDGYSDRFPIFLYVPA- 672
+RN + G+++V+N+ +HK V +RYT++ W ++TD+ +YV S DG SDRF + +P
Sbjct: 110 SRNTIMGTIKVKNISYHKEVLVRYTLDSWHSFTDVPASYVLDSFDGNSDRFSFAVTIPEY 169
Query: 673 -ITSGQRLENRRAISSVKGSNFW 738
+TSG ++ + G FW
Sbjct: 170 FMTSGGNIDFAICFRA-DGKEFW 191
>SB_17798| Best HMM Match : CBM_21 (HMM E-Value=2.4e-29)
Length = 207
Score = 51.6 bits (118), Expect = 8e-07
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +1
Query: 508 LCGSVRVRNLDFHKTVHIRYTMNRWRTYTDLQTTYVQGSCDGYSDRFPIFLYVPA-ITSG 684
L G++ V N++F K V +RY+M+ WRT+TD+ YV G DRF + + I G
Sbjct: 109 LTGTILVENIEFCKDVTVRYSMDEWRTFTDVWADYVNQLAGGTLDRFQFRISITQNIEVG 168
Query: 685 QRLE 696
+LE
Sbjct: 169 SKLE 172
>SB_54609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 408
Score = 47.2 bits (107), Expect = 2e-05
Identities = 20/54 (37%), Positives = 34/54 (62%)
Frame = +1
Query: 508 LCGSVRVRNLDFHKTVHIRYTMNRWRTYTDLQTTYVQGSCDGYSDRFPIFLYVP 669
L GSV+V+N+ + K V +R+T++ W ++T+ +YV GS +D F L +P
Sbjct: 293 LRGSVKVKNIAYEKRVFVRWTIDNWESHTETPASYVPGSLTETTDDFAFELRMP 346
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 428 PRDVTDKLERQNVCLESARVCDGV 499
P + D+LE+ VCLES +CD V
Sbjct: 269 PNSLRDRLEKNTVCLESITLCDYV 292
>SB_17796| Best HMM Match : CBM_21 (HMM E-Value=2.1e-23)
Length = 212
Score = 46.0 bits (104), Expect = 4e-05
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +1
Query: 514 GSVRVRNLDFHKTVHIRYTMNRWRTYTDLQTTYVQGSCDGYSDRFPIFLYVPAITSGQRL 693
G VRV NL F K + IRYT + W+ + D+ YV + D +D++ + + A ++
Sbjct: 102 GLVRVVNLAFEKMIIIRYTTDEWKGFRDIWADYVSSTPDKRTDKYTFRISLCASMFNEKK 161
Query: 694 ENRRAIS-SVKGSNFW 738
+ AI KG +W
Sbjct: 162 RLQFAICFRAKGEEYW 177
>SB_22407| Best HMM Match : CBM_21 (HMM E-Value=5.1e-05)
Length = 84
Score = 44.8 bits (101), Expect = 9e-05
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 508 LCGSVRVRNLDFHKTVHIRYTMNRWRTYTDLQTTYVQGSCDGYSDRFPIFLYVP-AITSG 684
L G +RV N+ + K V +RY+ + W +Y DL ++ S +G D+F L P + G
Sbjct: 3 LVGLIRVWNIAYEKKVFVRYSTDNWSSYVDLPAEFMSQSHEGTIDKFVFKLLAPVGLAVG 62
Query: 685 QRLE 696
+E
Sbjct: 63 DTIE 66
>SB_3025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 39.9 bits (89), Expect = 0.003
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +1
Query: 508 LCGSVRVRNLDFHKTVHIRYTMNRWRTYTDLQTTYVQGSCDGYSDRFPIFLYVP 669
L G +RVRN+ + K V RY+++ W + D ++ + +G D+F L +P
Sbjct: 138 LIGLIRVRNISYEKEVFARYSIDHWIHFQDCMAAHLLQTNEGKFDKFIFKLVLP 191
>SB_3023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 38.3 bits (85), Expect = 0.008
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +1
Query: 508 LCGSVRVRNLDFHKTVHIRYTMNRWRTYTDLQTTYVQGSCDGYSDRFPIFLYVP 669
L G +RVRN+ + K V RY+++ W + D ++ + G D+F L +P
Sbjct: 138 LIGLIRVRNISYEKEVFARYSIDHWIHFQDCMAAHLLQTNRGEFDKFIFKLVLP 191
>SB_24987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 684
Score = 34.3 bits (75), Expect = 0.13
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +3
Query: 507 PMWFRART*LGLSQNRTHSVHNEQMENLHRLADYIRSRVLRWLLGPISNFFIRSGYNFRT 686
P++ R LG + H++HN N+H L I + + + G I+ F R + R
Sbjct: 409 PLYTDHRHTLGNISDMVHTIHNHTYTNMHMLNQLINNTGILYKEGYINTTFYREAFPRRA 468
Query: 687 ETRKSP 704
+ K P
Sbjct: 469 DGAKPP 474
>SB_35065| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 478 TLQTHILSFQFVRDVPRQLKKWNQGERAKSLR 383
TL +LSF F +D+ ++ K + RAKSLR
Sbjct: 311 TLYVRVLSFSFAKDIIQKFKSKVKLSRAKSLR 342
>SB_17862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 29.9 bits (64), Expect = 2.7
Identities = 21/84 (25%), Positives = 36/84 (42%)
Frame = +2
Query: 290 KTFMDEIPVIPKSAYDDLTGCDVQNSPPVRSPQRLGALTLIPLFQLPRDVTDKLERQNVC 469
K +D +P++ +S +DDL +N V + +L V D +ER+ +C
Sbjct: 565 KMGLDPLPMMDRSKHDDLP----ENQATVYGYMETHPAIMCDRMRLYAVVCDHMERKPLC 620
Query: 470 LESARVCDGVHVTYVVPCAYVTWT 541
+A CD V C ++ T
Sbjct: 621 DRNATGCDRTVKLAAVDCDHMETT 644
>SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
Length = 1775
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -2
Query: 520 RNHIGYVHAIANPSTLQTHILSFQFVRDVPRQL-KKWNQGERAKSLRASNRWRIL 359
+ ++G+ H S ++TH+L + V PR+L K+ + K +A ++W I+
Sbjct: 1280 KQNMGHAHDSVWKSGMRTHMLLTEVVDRSPRKLPPKFEMTPKDKQHKAHSKWDII 1334
>SB_49473| Best HMM Match : UPF0081 (HMM E-Value=3.7)
Length = 170
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +3
Query: 573 EQMENLHR--LADYIRSRVLRWLLGPISNFFIRSGYNFRTETRKSPCDFQCKGQQ 731
+ + +LH ++DYI R + P+S G++ R TR +PC+ + G++
Sbjct: 116 DSVVDLHNDLVSDYIIKRAPHIVRKPVSTLRSFDGFSRRGVTRSTPCEHRRNGKR 170
>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2162
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = -2
Query: 562 ECVRFCESPSYVRARNHIGYVHAIANPSTLQTHILSFQFVRDVPRQLKKWNQGERAKSLR 383
E +R C Y H +++AIANP T +L+ +R +W Q RAKS
Sbjct: 1410 ELLRICYILVYTTTHPHFFFIYAIANPCCF-TSVLAVLNIR------YEWVQFHRAKSSA 1462
Query: 382 A 380
A
Sbjct: 1463 A 1463
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,286,658
Number of Sequences: 59808
Number of extensions: 604920
Number of successful extensions: 1501
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1500
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -