BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0495 (848 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g07180.1 68414.m00764 pyridine nucleotide-disulphide oxidored... 30 2.2 At1g54680.1 68414.m06234 expressed protein 29 5.2 At1g31070.2 68414.m03804 UDP-N-acetylglucosamine pyrophosphoryla... 28 6.8 >At1g07180.1 68414.m00764 pyridine nucleotide-disulphide oxidoreductase family protein contains similarity to alternative NADH-dehydrogenase GI:3718005 from [Yarrowia lipolytica], SP|P32340 Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor (EC 1.6.5.3) (Internal NADH dehydrogenase) {Saccharomyces cerevisiae} ; contains Pfam profile PF00070: Pyridine nucleotide-disulphide oxidoreductase Length = 510 Score = 29.9 bits (64), Expect = 2.2 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = +1 Query: 526 VRNLDFHKTVHIRYTMNRWRTYTDLQTTYVQGSCDGY 636 VR+LDF K R ++ W +Q + G C GY Sbjct: 350 VRSLDFPKDPGGRIGIDEWMRVPSVQDVFAIGDCSGY 386 >At1g54680.1 68414.m06234 expressed protein Length = 289 Score = 28.7 bits (61), Expect = 5.2 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = -1 Query: 773 KSKHNCSAXYGPQKLLPFTLEIARR 699 KSKH C + +G KLLP L+++ + Sbjct: 50 KSKHGCLSAFGSAKLLPKKLDMSSK 74 >At1g31070.2 68414.m03804 UDP-N-acetylglucosamine pyrophosphorylase-related low similarity to SP|P43123 UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) {Saccharomyces cerevisiae} Length = 505 Score = 28.3 bits (60), Expect = 6.8 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Frame = +1 Query: 646 FPIFLYVP--AITSGQRLENRRAISSVKGSNFWGP*XAEQLCFDLF*RWVLFPKGW 807 F F Y P A+ R E + +V GSNF P A L L RWV+ G+ Sbjct: 408 FDSFPYAPSTALFEVLREEEFAPVKNVNGSNFDTPESARLLVLRLHTRWVIAAGGF 463 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,833,306 Number of Sequences: 28952 Number of extensions: 406240 Number of successful extensions: 1066 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 1027 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1065 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1970388800 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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