Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0495
         (848 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07180.1 68414.m00764 pyridine nucleotide-disulphide oxidored...    30   2.2  
At1g54680.1 68414.m06234 expressed protein                             29   5.2  
At1g31070.2 68414.m03804 UDP-N-acetylglucosamine pyrophosphoryla...    28   6.8  

>At1g07180.1 68414.m00764 pyridine nucleotide-disulphide
           oxidoreductase family protein contains similarity to
           alternative NADH-dehydrogenase GI:3718005 from [Yarrowia
           lipolytica], SP|P32340 Rotenone-insensitive
           NADH-ubiquinone oxidoreductase, mitochondrial precursor
           (EC 1.6.5.3) (Internal NADH dehydrogenase)
           {Saccharomyces cerevisiae} ; contains Pfam profile
           PF00070: Pyridine nucleotide-disulphide oxidoreductase
          Length = 510

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 526 VRNLDFHKTVHIRYTMNRWRTYTDLQTTYVQGSCDGY 636
           VR+LDF K    R  ++ W     +Q  +  G C GY
Sbjct: 350 VRSLDFPKDPGGRIGIDEWMRVPSVQDVFAIGDCSGY 386


>At1g54680.1 68414.m06234 expressed protein
          Length = 289

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 773 KSKHNCSAXYGPQKLLPFTLEIARR 699
           KSKH C + +G  KLLP  L+++ +
Sbjct: 50  KSKHGCLSAFGSAKLLPKKLDMSSK 74


>At1g31070.2 68414.m03804 UDP-N-acetylglucosamine
           pyrophosphorylase-related low similarity to SP|P43123
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           {Saccharomyces cerevisiae}
          Length = 505

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +1

Query: 646 FPIFLYVP--AITSGQRLENRRAISSVKGSNFWGP*XAEQLCFDLF*RWVLFPKGW 807
           F  F Y P  A+    R E    + +V GSNF  P  A  L   L  RWV+   G+
Sbjct: 408 FDSFPYAPSTALFEVLREEEFAPVKNVNGSNFDTPESARLLVLRLHTRWVIAAGGF 463


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,833,306
Number of Sequences: 28952
Number of extensions: 406240
Number of successful extensions: 1066
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)