Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0488
         (582 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93380-7|CAB07603.2|  335|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z82053-11|CAB04839.2|  335|Caenorhabditis elegans Hypothetical p...    30   1.0  

>Z93380-7|CAB07603.2|  335|Caenorhabditis elegans Hypothetical
           protein T26E3.9 protein.
          Length = 335

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
 Frame = +2

Query: 95  LSFHFCRLYVFVTIRAHL*SSRCRXXXXXXXXNSL-HRARNENILIITI---LIYV---C 253
           LSF+F RL +   +R ++ S+  +        NS+ H+A    I I  +    +Y    C
Sbjct: 37  LSFYFARLAILALLRNNIFSNSTQRILLVCLVNSVFHQAATLEIRIHQVYRSFVYASDPC 96

Query: 254 EKIF-FAXINWIRFFL*L-NFASQ*QFFSLPYPISKNKLIT*QNKIFFYLKQNFLA 415
             +F F       +F  L N+ S    FSL +    ++LI+  N  F++ +QNF++
Sbjct: 97  SLLFHFTECEVELYFYYLTNYFSTYSVFSLTF----DRLISHYNPRFYFSQQNFVS 148


>Z82053-11|CAB04839.2|  335|Caenorhabditis elegans Hypothetical
           protein T26E3.9 protein.
          Length = 335

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
 Frame = +2

Query: 95  LSFHFCRLYVFVTIRAHL*SSRCRXXXXXXXXNSL-HRARNENILIITI---LIYV---C 253
           LSF+F RL +   +R ++ S+  +        NS+ H+A    I I  +    +Y    C
Sbjct: 37  LSFYFARLAILALLRNNIFSNSTQRILLVCLVNSVFHQAATLEIRIHQVYRSFVYASDPC 96

Query: 254 EKIF-FAXINWIRFFL*L-NFASQ*QFFSLPYPISKNKLIT*QNKIFFYLKQNFLA 415
             +F F       +F  L N+ S    FSL +    ++LI+  N  F++ +QNF++
Sbjct: 97  SLLFHFTECEVELYFYYLTNYFSTYSVFSLTF----DRLISHYNPRFYFSQQNFVS 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,849,202
Number of Sequences: 27780
Number of extensions: 217371
Number of successful extensions: 346
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)