Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0488
         (582 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10230.1 68416.m01224 lycopene beta cyclase (LYC) identical t...    29   2.3  
At1g28300.1 68414.m03473 transcriptional factor B3 family protei...    27   9.1  

>At3g10230.1 68416.m01224 lycopene beta cyclase (LYC) identical to
           lycopene beta cyclase GI:1399183|GB:AAB53337
           [Arabidopsis thaliana]
          Length = 501

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 110 RSEMTRPVVRVNPKFLKCKGMNSNGTNLI*FHYKKI 3
           + +++RP  RVN K LK K +    TN + FH  K+
Sbjct: 155 KKDLSRPYGRVNRKQLKSKMLQKCITNGVKFHQSKV 190


>At1g28300.1 68414.m03473 transcriptional factor B3 family protein /
           leafy cotyledon 2 (LEC2) nearly identical to LEAFY
           COTYLEDON 2 [Arabidopsis thaliana] GI:15987516; contains
           Pfam profile PF02362: B3 DNA binding domain
          Length = 363

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 63  QKLRIDPNNGSCHFTSV 113
           Q+L +DPNN   HFT+V
Sbjct: 16  QELSMDPNNNRSHFTTV 32


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,611,278
Number of Sequences: 28952
Number of extensions: 183466
Number of successful extensions: 285
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)