BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0488 (582 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g10230.1 68416.m01224 lycopene beta cyclase (LYC) identical t... 29 2.3 At1g28300.1 68414.m03473 transcriptional factor B3 family protei... 27 9.1 >At3g10230.1 68416.m01224 lycopene beta cyclase (LYC) identical to lycopene beta cyclase GI:1399183|GB:AAB53337 [Arabidopsis thaliana] Length = 501 Score = 29.1 bits (62), Expect = 2.3 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = -2 Query: 110 RSEMTRPVVRVNPKFLKCKGMNSNGTNLI*FHYKKI 3 + +++RP RVN K LK K + TN + FH K+ Sbjct: 155 KKDLSRPYGRVNRKQLKSKMLQKCITNGVKFHQSKV 190 >At1g28300.1 68414.m03473 transcriptional factor B3 family protein / leafy cotyledon 2 (LEC2) nearly identical to LEAFY COTYLEDON 2 [Arabidopsis thaliana] GI:15987516; contains Pfam profile PF02362: B3 DNA binding domain Length = 363 Score = 27.1 bits (57), Expect = 9.1 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +3 Query: 63 QKLRIDPNNGSCHFTSV 113 Q+L +DPNN HFT+V Sbjct: 16 QELSMDPNNNRSHFTTV 32 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,611,278 Number of Sequences: 28952 Number of extensions: 183466 Number of successful extensions: 285 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 278 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 285 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1141585696 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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