Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0485
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    37   0.001
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    33   0.014
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    33   0.018
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      32   0.042
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    29   0.22 
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    27   0.90 
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    26   2.1  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   4.8  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   6.3  
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom...    25   6.3  
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    24   8.4  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    24   8.4  

>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 36.7 bits (81), Expect = 0.001
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +3

Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGKVEDSPS*GFSSVVTLKK 317
           V NL++  T +DL   F  CG++  I +P D   G+++      FS + + KK
Sbjct: 370 VGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK 422


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 33.5 bits (73), Expect = 0.014
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +3

Query: 123 PPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
           P  R DG   + +  L + TT + LR  FE+ GEV D  + RD T G+
Sbjct: 157 PFNREDG--KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGR 202


>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 33.1 bits (72), Expect = 0.018
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +3

Query: 138 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
           D  V L V NL   ++ E L+  F+R G+V  + IP D+T G+
Sbjct: 89  DRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGR 131


>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 31.9 bits (69), Expect = 0.042
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263
           S+ V N+ Y  TPE+L+  F  CG V  + I  D+  G
Sbjct: 56  SVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTG 93


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 29.5 bits (63), Expect = 0.22
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251
           L V N+ +  T ED++ +FE  G++  +++ RD
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD 374



 Score = 28.3 bits (60), Expect = 0.51
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
           V  L  R T  +L   FE+ G V D  I RD+  G+
Sbjct: 244 VSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGR 279


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 27.5 bits (58), Expect = 0.90
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 165 NLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254
           NLTY    +DL+ +F   G++  +++P D+
Sbjct: 329 NLTYSCAEDDLKSLFGPFGQLEQVHMPIDK 358


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 168 DYLLLTRPCHRFVAEVFRNSF*VV*IFSSNQTN*II 61
           D++ +T P H FV  + RNS   + + S+N +N I+
Sbjct: 145 DFMNITDPTHGFVQYLDRNSSAKLGLISANSSNVIM 180


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 96  ILLKMSYGRPPPRIDGMVSLKVDNLTYRTT-PEDLRRVFERCGEVGDI 236
           ILL+  + +     D M S + + L +R   PED+R  FE  G  GDI
Sbjct: 856 ILLENGFQKFVQAFDDMESSR-EGLGFRELIPEDIRAHFEDVGLPGDI 902


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
           L V N+ ++   +D+   F   G+V  + IP+   Q K
Sbjct: 759 LYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHK 796


>SPBC21C3.07c |||actin binding methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 281

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -3

Query: 264 SLVSDLWECRYHQLLRTFRKRGVSLQASFGR*DYLLLTRPCHRFVAEVF 118
           +L  D W+     L R  +  G+ L   +GR D   L    +R ++E F
Sbjct: 202 ALSPDQWQQAIENLYRLLKPGGLILFRDYGRLDLTQLRAKKNRILSENF 250


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 374 PSXREVPCRPTFVRPSCP 321
           P  +EV   PTFV+  CP
Sbjct: 328 PDYQEVGSTPTFVQTQCP 345


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQ 260
           ++ + NL  + T   L  +  + G V +I+IPRDR +
Sbjct: 12  TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVR 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,527,009
Number of Sequences: 5004
Number of extensions: 28189
Number of successful extensions: 79
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)