BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0485 (419 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 89 2e-18 SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.096 SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.29 SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 31 0.39 SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.39 SB_42066| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.51 SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 30 0.68 SB_10425| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2 SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6 SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 29 1.6 SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6 SB_46137| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8 SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3 SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 27 6.3 SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 27 6.3 SB_59672| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3 SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 27 8.3 SB_42104| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3 SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07) 27 8.3 SB_8753| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3 >SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 204 Score = 88.6 bits (210), Expect = 2e-18 Identities = 45/91 (49%), Positives = 53/91 (58%) Frame = +3 Query: 120 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGKVEDSPS*GFSS 299 R PP IDGM SLKVDNLTYRTT EDL++VF++ G++GDIYIPRDR + F Sbjct: 7 RGPPEIDGMTSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYE 66 Query: 300 VVTLKKPWTRWTDECWTAGNFAXRWRDMVAP 392 + C A F RWRDMV P Sbjct: 67 KRDAEDAMDCMDATCLMAEKFVFRWRDMVVP 97 >SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 215 Score = 33.1 bits (72), Expect = 0.096 Identities = 16/32 (50%), Positives = 20/32 (62%) Frame = +3 Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254 V NL Y T DL +VFER G+V + I RD+ Sbjct: 14 VGNLPYSLTNSDLHKVFERYGKVVKVTILRDK 45 >SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 435 Score = 31.5 bits (68), Expect = 0.29 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = +3 Query: 99 LLKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPR 248 L ++ RP ++ L V L TT + L F + GEV D+YIP+ Sbjct: 183 LCEVRLPRPKEELNVPKKLFVGRLPESTTEKTLMEYFAQFGEVTDVYIPK 232 >SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) Length = 407 Score = 31.1 bits (67), Expect = 0.39 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +3 Query: 138 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263 D S+ + NL + E LR +F CG V + + RDR G Sbjct: 53 DHQRSVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTG 94 >SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) Length = 420 Score = 31.1 bits (67), Expect = 0.39 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = +3 Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDI 236 L V +L + TT ++LR FE+CGE+ I Sbjct: 238 LMVQDLDFDTTVDELREYFEKCGELTGI 265 Score = 30.7 bits (66), Expect = 0.51 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = +3 Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266 +L VDNL+ T D+ R F G+V ++I DR GK Sbjct: 320 TLFVDNLSEDTKELDVLRYFRPYGQVAKVHILTDRETGK 358 >SB_42066| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 240 Score = 30.7 bits (66), Expect = 0.51 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%) Frame = +3 Query: 147 VSLKVDNLTYR--TTPEDLRRVFERCGEVGDI-YIPRDR 254 +S+K +N R T E+L +FE CG+V D ++P+DR Sbjct: 147 LSVKYNNDKTRESVTEEELTSMFEDCGDVADFRFLPKDR 185 >SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) Length = 328 Score = 30.3 bits (65), Expect = 0.68 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = +3 Query: 138 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266 D + L V L+Y TT E L+ F + GE+ + I D G+ Sbjct: 26 DDIGKLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGR 68 >SB_10425| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 293 Score = 29.5 bits (63), Expect = 1.2 Identities = 14/40 (35%), Positives = 19/40 (47%) Frame = -1 Query: 359 VPCRPTFVRPSCPGLLQRHDARKTSXRRILYFPLCPISGN 240 +P PT++ P L H A L +PLCP SG+ Sbjct: 133 IPLDPTWIGRGYPTLTSPHYASTAHAHMHLPWPLCPYSGS 172 >SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 732 Score = 29.1 bits (62), Expect = 1.6 Identities = 20/56 (35%), Positives = 25/56 (44%) Frame = +3 Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGKVEDSPS*GFSSVVTLKK 317 SL V NL+Y TT + L FE C I+ DR G+ + V T KK Sbjct: 290 SLIVRNLSYDTTTDSLGAAFEGCSNAKVIF---DRESGESRGFGFVDYDDVETAKK 342 >SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) Length = 1531 Score = 29.1 bits (62), Expect = 1.6 Identities = 15/33 (45%), Positives = 20/33 (60%) Frame = +3 Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPR 248 +L V N+ TT DL+ FER GEV D+ I + Sbjct: 250 TLFVGNIEKTTTYGDLKEAFERYGEVIDVDIKK 282 >SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 4924 Score = 27.9 bits (59), Expect = 3.6 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = +3 Query: 102 LKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCG 221 +K+S+ R P+I S V T TTPE+LR++ E G Sbjct: 1522 MKLSF-RTGPQIGRTKSGFVATYTSGTTPEELRKISENAG 1560 >SB_46137| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 646 Score = 27.5 bits (58), Expect = 4.8 Identities = 12/44 (27%), Positives = 22/44 (50%) Frame = -2 Query: 370 LXAKFPAVQHSSVHRVQGFFSVTTLEKPXEGESSTFPCVRSLGM 239 L K +QH++V + + + L+ P + + + RSLGM Sbjct: 74 LKIKLEGLQHNAVKAIVDYLYTSCLDVPADSVLNVYLAARSLGM 117 >SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1199 Score = 27.1 bits (57), Expect = 6.3 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +3 Query: 192 DLRRVFERCGEVGDIYIPRDRTQGKVEDSPS 284 D +R E GE G+ + P + T+G+ + SPS Sbjct: 646 DSKRKEEERGEGGEEFSPEEGTEGRDDGSPS 676 >SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) Length = 929 Score = 27.1 bits (57), Expect = 6.3 Identities = 16/38 (42%), Positives = 25/38 (65%) Frame = +3 Query: 114 YGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEV 227 YG PP R + S+ V+NL+ RT+ +DL+ F + G+V Sbjct: 790 YG-PPVRTN--YSVIVENLSSRTSWQDLKDYFRKYGKV 824 >SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) Length = 97 Score = 27.1 bits (57), Expect = 6.3 Identities = 9/26 (34%), Positives = 17/26 (65%) Frame = +3 Query: 177 RTTPEDLRRVFERCGEVGDIYIPRDR 254 R ED+R FE+ G + D+++ +D+ Sbjct: 33 RHNAEDIRSAFEQYGTIEDVWVVKDK 58 >SB_59672| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 198 Score = 26.6 bits (56), Expect = 8.3 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +1 Query: 4 TRSTDVTPSCYTKVNLTTLYYSICL 78 T + V P C T++ LTT +Y+I L Sbjct: 144 TSTLMVRPHCTTRITLTTRHYTITL 168 >SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) Length = 255 Score = 26.6 bits (56), Expect = 8.3 Identities = 15/53 (28%), Positives = 26/53 (49%) Frame = +3 Query: 117 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGKVED 275 G R V L V + +DLR +FE G++ ++ I +D+ G+ +D Sbjct: 160 GTTSVRDSNSVKLFVGQVPRTWEEKDLRPIFEPYGQIYELTILKDKYTGQHKD 212 >SB_42104| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 238 Score = 26.6 bits (56), Expect = 8.3 Identities = 10/33 (30%), Positives = 15/33 (45%) Frame = +3 Query: 294 SSVVTLKKPWTRWTDECWTAGNFAXRWRDMVAP 392 S +++PWTR W G +R +AP Sbjct: 83 SDAQLVRRPWTREVWRLWNPGYITPTFRKAIAP 115 >SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07) Length = 694 Score = 26.6 bits (56), Expect = 8.3 Identities = 16/33 (48%), Positives = 18/33 (54%) Frame = +3 Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251 L V L+ TT DLR VFE+ G V I I D Sbjct: 183 LGVFGLSLYTTERDLRPVFEKYGPVEAIQIVYD 215 >SB_8753| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 81 Score = 26.6 bits (56), Expect = 8.3 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Frame = +3 Query: 90 ISILLKMSYGRPPPRIDGMVSLKVDNLTY---RTTPEDLRRVFERCGEVGD 233 + +L ++ PPP S D LTY RT+P ++ + E GEVGD Sbjct: 4 VKLLEEVPVHLPPPVFRDPQSSIQDKLTYPTSRTSPFEVCCIDEDGGEVGD 54 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,560,685 Number of Sequences: 59808 Number of extensions: 211634 Number of successful extensions: 493 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 477 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 492 length of database: 16,821,457 effective HSP length: 75 effective length of database: 12,335,857 effective search space used: 789494848 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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