Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0485
         (419 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)              89   2e-18
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.096
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.29 
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)                 31   0.39 
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)                       31   0.39 
SB_42066| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.51 
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)                  30   0.68 
SB_10425| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)             29   1.6  
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_46137| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)                 27   6.3  
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)                 27   6.3  
SB_59672| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)                   27   8.3  
SB_42104| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)                 27   8.3  
SB_8753| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.3  

>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 88.6 bits (210), Expect = 2e-18
 Identities = 45/91 (49%), Positives = 53/91 (58%)
 Frame = +3

Query: 120 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGKVEDSPS*GFSS 299
           R PP IDGM SLKVDNLTYRTT EDL++VF++ G++GDIYIPRDR   +        F  
Sbjct: 7   RGPPEIDGMTSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYE 66

Query: 300 VVTLKKPWTRWTDECWTAGNFAXRWRDMVAP 392
               +         C  A  F  RWRDMV P
Sbjct: 67  KRDAEDAMDCMDATCLMAEKFVFRWRDMVVP 97


>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 33.1 bits (72), Expect = 0.096
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254
           V NL Y  T  DL +VFER G+V  + I RD+
Sbjct: 14  VGNLPYSLTNSDLHKVFERYGKVVKVTILRDK 45


>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 31.5 bits (68), Expect = 0.29
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 99  LLKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPR 248
           L ++   RP   ++    L V  L   TT + L   F + GEV D+YIP+
Sbjct: 183 LCEVRLPRPKEELNVPKKLFVGRLPESTTEKTLMEYFAQFGEVTDVYIPK 232


>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
          Length = 407

 Score = 31.1 bits (67), Expect = 0.39
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 138 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263
           D   S+ + NL +    E LR +F  CG V  + + RDR  G
Sbjct: 53  DHQRSVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTG 94


>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 420

 Score = 31.1 bits (67), Expect = 0.39
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDI 236
           L V +L + TT ++LR  FE+CGE+  I
Sbjct: 238 LMVQDLDFDTTVDELREYFEKCGELTGI 265



 Score = 30.7 bits (66), Expect = 0.51
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
           +L VDNL+  T   D+ R F   G+V  ++I  DR  GK
Sbjct: 320 TLFVDNLSEDTKELDVLRYFRPYGQVAKVHILTDRETGK 358


>SB_42066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 240

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = +3

Query: 147 VSLKVDNLTYR--TTPEDLRRVFERCGEVGDI-YIPRDR 254
           +S+K +N   R   T E+L  +FE CG+V D  ++P+DR
Sbjct: 147 LSVKYNNDKTRESVTEEELTSMFEDCGDVADFRFLPKDR 185


>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
          Length = 328

 Score = 30.3 bits (65), Expect = 0.68
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 138 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
           D +  L V  L+Y TT E L+  F + GE+  + I  D   G+
Sbjct: 26  DDIGKLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGR 68


>SB_10425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 293

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 359 VPCRPTFVRPSCPGLLQRHDARKTSXRRILYFPLCPISGN 240
           +P  PT++    P L   H A        L +PLCP SG+
Sbjct: 133 IPLDPTWIGRGYPTLTSPHYASTAHAHMHLPWPLCPYSGS 172


>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = +3

Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGKVEDSPS*GFSSVVTLKK 317
           SL V NL+Y TT + L   FE C     I+   DR  G+        +  V T KK
Sbjct: 290 SLIVRNLSYDTTTDSLGAAFEGCSNAKVIF---DRESGESRGFGFVDYDDVETAKK 342


>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
          Length = 1531

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +3

Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPR 248
           +L V N+   TT  DL+  FER GEV D+ I +
Sbjct: 250 TLFVGNIEKTTTYGDLKEAFERYGEVIDVDIKK 282


>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4924

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 102  LKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCG 221
            +K+S+ R  P+I    S  V   T  TTPE+LR++ E  G
Sbjct: 1522 MKLSF-RTGPQIGRTKSGFVATYTSGTTPEELRKISENAG 1560


>SB_46137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 646

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 370 LXAKFPAVQHSSVHRVQGFFSVTTLEKPXEGESSTFPCVRSLGM 239
           L  K   +QH++V  +  +   + L+ P +   + +   RSLGM
Sbjct: 74  LKIKLEGLQHNAVKAIVDYLYTSCLDVPADSVLNVYLAARSLGM 117


>SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1199

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 192 DLRRVFERCGEVGDIYIPRDRTQGKVEDSPS 284
           D +R  E  GE G+ + P + T+G+ + SPS
Sbjct: 646 DSKRKEEERGEGGEEFSPEEGTEGRDDGSPS 676


>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
          Length = 929

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = +3

Query: 114 YGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEV 227
           YG PP R +   S+ V+NL+ RT+ +DL+  F + G+V
Sbjct: 790 YG-PPVRTN--YSVIVENLSSRTSWQDLKDYFRKYGKV 824


>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
          Length = 97

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 177 RTTPEDLRRVFERCGEVGDIYIPRDR 254
           R   ED+R  FE+ G + D+++ +D+
Sbjct: 33  RHNAEDIRSAFEQYGTIEDVWVVKDK 58


>SB_59672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 4   TRSTDVTPSCYTKVNLTTLYYSICL 78
           T +  V P C T++ LTT +Y+I L
Sbjct: 144 TSTLMVRPHCTTRITLTTRHYTITL 168


>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
          Length = 255

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 117 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGKVED 275
           G    R    V L V  +      +DLR +FE  G++ ++ I +D+  G+ +D
Sbjct: 160 GTTSVRDSNSVKLFVGQVPRTWEEKDLRPIFEPYGQIYELTILKDKYTGQHKD 212


>SB_42104| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 294 SSVVTLKKPWTRWTDECWTAGNFAXRWRDMVAP 392
           S    +++PWTR     W  G     +R  +AP
Sbjct: 83  SDAQLVRRPWTREVWRLWNPGYITPTFRKAIAP 115


>SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)
          Length = 694

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +3

Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251
           L V  L+  TT  DLR VFE+ G V  I I  D
Sbjct: 183 LGVFGLSLYTTERDLRPVFEKYGPVEAIQIVYD 215


>SB_8753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +3

Query: 90  ISILLKMSYGRPPPRIDGMVSLKVDNLTY---RTTPEDLRRVFERCGEVGD 233
           + +L ++    PPP      S   D LTY   RT+P ++  + E  GEVGD
Sbjct: 4   VKLLEEVPVHLPPPVFRDPQSSIQDKLTYPTSRTSPFEVCCIDEDGGEVGD 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,560,685
Number of Sequences: 59808
Number of extensions: 211634
Number of successful extensions: 493
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)