Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0485
(419 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X75755-1|CAA53383.1| 221|Homo sapiens PR264/SC35 protein. 90 2e-18
X62447-1|CAA44307.1| 221|Homo sapiens PR 264 protein. 90 2e-18
BT007250-1|AAP35914.1| 221|Homo sapiens splicing factor, argini... 90 2e-18
BC070086-1|AAH70086.1| 221|Homo sapiens splicing factor, argini... 90 2e-18
BC066958-1|AAH66958.1| 179|Homo sapiens SFRS2 protein protein. 90 2e-18
BC001303-1|AAH01303.1| 221|Homo sapiens SFRS2 protein protein. 90 2e-18
BC000339-1|AAH00339.1| 221|Homo sapiens SFRS2 protein protein. 90 2e-18
AK223252-1|BAD96972.1| 221|Homo sapiens splicing factor, argini... 90 2e-18
AK093626-1|BAC04206.1| 186|Homo sapiens protein ( Homo sapiens ... 90 2e-18
AK092489-1|BAC03903.1| 201|Homo sapiens protein ( Homo sapiens ... 90 2e-18
M90104-1|AAA60306.1| 221|Homo sapiens splicing factor protein. 87 2e-17
BC057783-1|AAH57783.1| 275|Homo sapiens SFRS2B protein protein. 85 9e-17
AF031165-1|AAK54350.1| 282|Homo sapiens SRp46 splicing factor p... 85 9e-17
AF031166-1|AAK54351.1| 272|Homo sapiens SRp46 splicing factor p... 69 6e-12
L03693-1|AAA60162.1| 34|Homo sapiens splicing factor protein. 64 1e-10
BC021715-1|AAH21715.1| 261|Homo sapiens serine-arginine repress... 40 0.003
AL353135-4|CAI16247.1| 262|Homo sapiens RP11-63L7.3 protein. 40 0.003
AF449428-1|AAL57515.1| 261|Homo sapiens SRrp35 protein. 40 0.003
U96074-1|AAC78728.1| 320|Homo sapiens translation initiation fa... 37 0.024
CR457134-1|CAG33415.1| 320|Homo sapiens EIF3S4 protein. 37 0.024
BT006889-1|AAP35535.1| 320|Homo sapiens eukaryotic translation ... 37 0.024
BC008469-1|AAH08469.1| 320|Homo sapiens eukaryotic translation ... 37 0.024
BC000733-1|AAH00733.1| 320|Homo sapiens eukaryotic translation ... 37 0.024
AF094850-1|AAG15419.1| 320|Homo sapiens eukaryotic translation ... 37 0.024
AF092453-1|AAG15396.1| 320|Homo sapiens eukaryotic translation ... 37 0.024
AF020833-1|AAB71866.1| 320|Homo sapiens eukaryotic translation ... 37 0.024
CR457272-1|CAG33553.1| 357|Homo sapiens PSPC1 protein. 37 0.032
BC014184-1|AAH14184.2| 393|Homo sapiens PSPC1 protein protein. 37 0.032
AL354808-5|CAI41005.1| 248|Homo sapiens paraspeckle component 1... 37 0.032
AL354808-4|CAI41004.1| 523|Homo sapiens paraspeckle component 1... 37 0.032
AK001817-1|BAA91924.1| 357|Homo sapiens protein ( Homo sapiens ... 37 0.032
AF449627-1|AAL59602.1| 393|Homo sapiens paraspeckle protein 1 b... 37 0.032
AF448795-1|AAL59601.1| 523|Homo sapiens paraspeckle protein 1 a... 37 0.032
BC071575-1|AAH71575.1| 69|Homo sapiens FUSIP1 protein protein. 36 0.073
BC010074-1|AAH10074.1| 173|Homo sapiens FUSIP1 protein protein. 36 0.073
BC005039-1|AAH05039.1| 262|Homo sapiens FUS interacting protein... 36 0.073
BC001107-1|AAH01107.1| 183|Homo sapiens FUS interacting protein... 36 0.073
AY150181-1|AAN65381.1| 183|Homo sapiens splicing factor SRp38-2... 36 0.073
AY150180-1|AAN65380.1| 262|Homo sapiens splicing factor SRp38 p... 36 0.073
AY048592-2|AAL06099.1| 262|Homo sapiens TLS-associated SR prote... 36 0.073
AY048592-1|AAL06098.1| 183|Homo sapiens TLS-associated SR prote... 36 0.073
AL590609-10|CAI14808.1| 262|Homo sapiens FUS interacting protei... 36 0.073
AL590609-9|CAI14807.1| 261|Homo sapiens FUS interacting protein... 36 0.073
AL590609-8|CAI14805.1| 173|Homo sapiens FUS interacting protein... 36 0.073
AL590609-7|CAI14806.1| 172|Homo sapiens FUS interacting protein... 36 0.073
AL590609-6|CAI14803.1| 183|Homo sapiens FUS interacting protein... 36 0.073
AL590609-5|CAI14804.1| 182|Homo sapiens FUS interacting protein... 36 0.073
AK222994-1|BAD96714.1| 262|Homo sapiens FUS interacting protein... 36 0.073
AK001286-1|BAA91601.1| 183|Homo sapiens protein ( Homo sapiens ... 36 0.073
AF449427-1|AAL57514.1| 262|Homo sapiens SRrp40 protein. 36 0.073
AF419332-1|AAL16666.1| 261|Homo sapiens TLS-associated protein ... 36 0.073
AF419331-1|AAL16665.1| 183|Homo sapiens TLS-associated protein ... 36 0.073
AF067730-1|AAC26727.1| 262|Homo sapiens TLS-associated protein ... 36 0.073
AF047448-1|AAC70918.1| 183|Homo sapiens TLS-associated protein ... 36 0.073
AL450998-14|CAH70862.1| 296|Homo sapiens SMART/HDAC1 associated... 32 0.90
AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated... 32 0.90
AL096858-1|CAB51072.1| 3261|Homo sapiens hypothetical protein pr... 32 0.90
AL034555-6|CAI19528.1| 296|Homo sapiens SMART/HDAC1 associated ... 32 0.90
AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated ... 32 0.90
AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor transc... 32 0.90
BC012062-1|AAH12062.1| 407|Homo sapiens DAZ associated protein ... 31 1.2
AY678451-1|AAV97647.1| 454|Homo sapiens DAZAP1/MEF2D fusion pro... 31 1.2
AY547318-1|AAS55633.1| 236|Homo sapiens unknown protein. 31 1.2
AL136305-1|CAC36889.1| 236|Homo sapiens protein ( Human DNA seq... 31 1.2
AK095016-1|BAC04474.1| 211|Homo sapiens protein ( Homo sapiens ... 31 1.2
AF181719-1|AAF78364.1| 407|Homo sapiens DAZ associated protein ... 31 1.2
BC013889-1|AAH13889.1| 759|Homo sapiens RNA binding motif prote... 31 2.1
AK222716-1|BAD96436.1| 759|Homo sapiens RNA binding motif prote... 31 2.1
AK001239-1|BAA91575.1| 759|Homo sapiens protein ( Homo sapiens ... 31 2.1
U38175-1|AAB41913.1| 326|Homo sapiens HuR RNA binding protein p... 30 2.7
BT009793-1|AAP88795.1| 326|Homo sapiens ELAV (embryonic lethal,... 30 2.7
BC130001-1|AAI30002.1| 255|Homo sapiens LOC390748 protein protein. 30 2.7
BC003376-1|AAH03376.1| 326|Homo sapiens ELAV (embryonic lethal,... 30 2.7
AC003982-3|AAB95636.1| 362|Homo sapiens WUGSC:H_166H1.2 protein. 30 2.7
AB073212-1|BAB70469.1| 179|Homo sapiens Musashi1 protein. 30 2.7
AB072592-1|BAB69769.1| 181|Homo sapiens Musashi1 protein. 30 2.7
AB072591-1|BAB69768.1| 181|Homo sapiens Musashi1 protein. 30 2.7
AB072590-1|BAB69767.1| 180|Homo sapiens Musashi1 protein. 30 2.7
AB012851-1|BAA33962.1| 362|Homo sapiens Musashi protein. 30 2.7
BC001526-1|AAH01526.1| 328|Homo sapiens musashi homolog 2 (Dros... 30 3.6
AK093888-1|BAC04244.1| 251|Homo sapiens protein ( Homo sapiens ... 30 3.6
AJ405692-1|CAC03805.1| 63|Homo sapiens T-cell receptor beta ch... 29 6.3
AF009786-1|AAB63916.1| 107|Homo sapiens T cell receptor beta ch... 29 6.3
U63289-1|AAC50895.1| 482|Homo sapiens CUG-BP/hNab50 protein. 29 8.4
BC031079-1|AAH31079.1| 483|Homo sapiens CUG triplet repeat, RNA... 29 8.4
AJ405859-1|CAC03972.1| 66|Homo sapiens T-cell receptor beta ch... 29 8.4
AJ405825-1|CAC03938.1| 65|Homo sapiens T-cell receptor beta ch... 29 8.4
AJ007988-1|CAC20566.1| 486|Homo sapiens deadenylation factor CU... 29 8.4
AF267534-1|AAF78956.1| 483|Homo sapiens CUG-binding protein A i... 29 8.4
AF267533-1|AAF78955.1| 486|Homo sapiens CUG-binding protein LYL... 29 8.4
AF248648-1|AAF86230.1| 486|Homo sapiens RNA-binding protein BRU... 29 8.4
AB210019-1|BAE06101.1| 544|Homo sapiens CUGBP1 variant protein ... 29 8.4
>X75755-1|CAA53383.1| 221|Homo sapiens PR264/SC35 protein.
Length = 221
Score = 90.2 bits (214), Expect = 2e-18
Identities = 38/49 (77%), Positives = 44/49 (89%)
Frame = +3
Query: 108 MSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254
MSYGRPPP ++GM SLKVDNLTYRT+P+ LRRVFE+ G VGD+YIPRDR
Sbjct: 1 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR 49
Score = 33.5 bits (73), Expect = 0.29
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +2
Query: 320 LDTMDGRMLDGRELRXQMA 376
+D MDG +LDGRELR QMA
Sbjct: 72 MDAMDGAVLDGRELRVQMA 90
>X62447-1|CAA44307.1| 221|Homo sapiens PR 264 protein.
Length = 221
Score = 90.2 bits (214), Expect = 2e-18
Identities = 38/49 (77%), Positives = 44/49 (89%)
Frame = +3
Query: 108 MSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254
MSYGRPPP ++GM SLKVDNLTYRT+P+ LRRVFE+ G VGD+YIPRDR
Sbjct: 1 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR 49
Score = 33.5 bits (73), Expect = 0.29
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +2
Query: 320 LDTMDGRMLDGRELRXQMA 376
+D MDG +LDGRELR QMA
Sbjct: 72 MDAMDGAVLDGRELRVQMA 90
>BT007250-1|AAP35914.1| 221|Homo sapiens splicing factor,
arginine/serine-rich 2 protein.
Length = 221
Score = 90.2 bits (214), Expect = 2e-18
Identities = 38/49 (77%), Positives = 44/49 (89%)
Frame = +3
Query: 108 MSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254
MSYGRPPP ++GM SLKVDNLTYRT+P+ LRRVFE+ G VGD+YIPRDR
Sbjct: 1 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR 49
Score = 33.5 bits (73), Expect = 0.29
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +2
Query: 320 LDTMDGRMLDGRELRXQMA 376
+D MDG +LDGRELR QMA
Sbjct: 72 MDAMDGAVLDGRELRVQMA 90
>BC070086-1|AAH70086.1| 221|Homo sapiens splicing factor,
arginine/serine-rich 2 protein.
Length = 221
Score = 90.2 bits (214), Expect = 2e-18
Identities = 38/49 (77%), Positives = 44/49 (89%)
Frame = +3
Query: 108 MSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254
MSYGRPPP ++GM SLKVDNLTYRT+P+ LRRVFE+ G VGD+YIPRDR
Sbjct: 1 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR 49
Score = 33.5 bits (73), Expect = 0.29
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +2
Query: 320 LDTMDGRMLDGRELRXQMA 376
+D MDG +LDGRELR QMA
Sbjct: 72 MDAMDGAVLDGRELRVQMA 90
>BC066958-1|AAH66958.1| 179|Homo sapiens SFRS2 protein protein.
Length = 179
Score = 90.2 bits (214), Expect = 2e-18
Identities = 38/49 (77%), Positives = 44/49 (89%)
Frame = +3
Query: 108 MSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254
MSYGRPPP ++GM SLKVDNLTYRT+P+ LRRVFE+ G VGD+YIPRDR
Sbjct: 1 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR 49
>BC001303-1|AAH01303.1| 221|Homo sapiens SFRS2 protein protein.
Length = 221
Score = 90.2 bits (214), Expect = 2e-18
Identities = 38/49 (77%), Positives = 44/49 (89%)
Frame = +3
Query: 108 MSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254
MSYGRPPP ++GM SLKVDNLTYRT+P+ LRRVFE+ G VGD+YIPRDR
Sbjct: 1 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR 49
Score = 33.5 bits (73), Expect = 0.29
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +2
Query: 320 LDTMDGRMLDGRELRXQMA 376
+D MDG +LDGRELR QMA
Sbjct: 72 MDAMDGAVLDGRELRVQMA 90
>BC000339-1|AAH00339.1| 221|Homo sapiens SFRS2 protein protein.
Length = 221
Score = 90.2 bits (214), Expect = 2e-18
Identities = 38/49 (77%), Positives = 44/49 (89%)
Frame = +3
Query: 108 MSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254
MSYGRPPP ++GM SLKVDNLTYRT+P+ LRRVFE+ G VGD+YIPRDR
Sbjct: 1 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR 49
Score = 33.5 bits (73), Expect = 0.29
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +2
Query: 320 LDTMDGRMLDGRELRXQMA 376
+D MDG +LDGRELR QMA
Sbjct: 72 MDAMDGAVLDGRELRVQMA 90
>AK223252-1|BAD96972.1| 221|Homo sapiens splicing factor,
arginine/serine-rich 2 variant protein.
Length = 221
Score = 90.2 bits (214), Expect = 2e-18
Identities = 38/49 (77%), Positives = 44/49 (89%)
Frame = +3
Query: 108 MSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254
MSYGRPPP ++GM SLKVDNLTYRT+P+ LRRVFE+ G VGD+YIPRDR
Sbjct: 1 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR 49
Score = 33.5 bits (73), Expect = 0.29
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +2
Query: 320 LDTMDGRMLDGRELRXQMA 376
+D MDG +LDGRELR QMA
Sbjct: 72 MDAMDGAVLDGRELRVQMA 90
>AK093626-1|BAC04206.1| 186|Homo sapiens protein ( Homo sapiens
cDNA FLJ36307 fis, clone THYMU2004906, moderately
similar to SPLICING FACTOR, ARGININE/SERINE-RICH 2. ).
Length = 186
Score = 90.2 bits (214), Expect = 2e-18
Identities = 38/49 (77%), Positives = 44/49 (89%)
Frame = +3
Query: 108 MSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254
MSYGRPPP ++GM SLKVDNLTYRT+P+ LRRVFE+ G VGD+YIPRDR
Sbjct: 1 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR 49
>AK092489-1|BAC03903.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ35170 fis, clone PLACE6012942, highly similar to
SPLICING FACTOR, ARGININE/SERINE-RICH 2. ).
Length = 201
Score = 90.2 bits (214), Expect = 2e-18
Identities = 38/49 (77%), Positives = 44/49 (89%)
Frame = +3
Query: 108 MSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254
MSYGRPPP ++GM SLKVDNLTYRT+P+ LRRVFE+ G VGD+YIPRDR
Sbjct: 1 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR 49
Score = 33.5 bits (73), Expect = 0.29
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +2
Query: 320 LDTMDGRMLDGRELRXQMA 376
+D MDG +LDGRELR QMA
Sbjct: 72 MDAMDGAVLDGRELRVQMA 90
>M90104-1|AAA60306.1| 221|Homo sapiens splicing factor protein.
Length = 221
Score = 87.0 bits (206), Expect = 2e-17
Identities = 37/49 (75%), Positives = 43/49 (87%)
Frame = +3
Query: 108 MSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 254
MSYGRPPP ++GM SLKVDNLTYRT+P+ LRRVFE+ VGD+YIPRDR
Sbjct: 1 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYRRVGDVYIPRDR 49
Score = 33.5 bits (73), Expect = 0.29
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +2
Query: 320 LDTMDGRMLDGRELRXQMA 376
+D MDG +LDGRELR QMA
Sbjct: 72 MDAMDGAVLDGRELRVQMA 90
>BC057783-1|AAH57783.1| 275|Homo sapiens SFRS2B protein protein.
Length = 275
Score = 85.0 bits (201), Expect = 9e-17
Identities = 35/48 (72%), Positives = 43/48 (89%)
Frame = +3
Query: 108 MSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251
MS GRPPP +DGM++LKVDNLTYRT+P+ LRRVFE+ G VGD+YIPR+
Sbjct: 1 MSCGRPPPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPRE 48
>AF031165-1|AAK54350.1| 282|Homo sapiens SRp46 splicing factor
protein.
Length = 282
Score = 85.0 bits (201), Expect = 9e-17
Identities = 35/48 (72%), Positives = 43/48 (89%)
Frame = +3
Query: 108 MSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251
MS GRPPP +DGM++LKVDNLTYRT+P+ LRRVFE+ G VGD+YIPR+
Sbjct: 1 MSCGRPPPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPRE 48
>AF031166-1|AAK54351.1| 272|Homo sapiens SRp46 splicing factor
protein.
Length = 272
Score = 68.9 bits (161), Expect = 6e-12
Identities = 28/38 (73%), Positives = 35/38 (92%)
Frame = +3
Query: 138 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251
DGM++LKVDNLTYRT+P+ LRRVFE+ G VGD+YIPR+
Sbjct: 1 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPRE 38
>L03693-1|AAA60162.1| 34|Homo sapiens splicing factor protein.
Length = 34
Score = 64.5 bits (150), Expect = 1e-10
Identities = 27/34 (79%), Positives = 31/34 (91%)
Frame = +3
Query: 108 MSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVF 209
MSYGRPPP ++GM SLKVDNLTYRT+P+ LRRVF
Sbjct: 1 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVF 34
>BC021715-1|AAH21715.1| 261|Homo sapiens serine-arginine repressor
protein (35 kDa) protein.
Length = 261
Score = 39.9 bits (89), Expect = 0.003
Identities = 22/46 (47%), Positives = 26/46 (56%)
Frame = +3
Query: 114 YGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251
Y RPP SL + N+ T PEDLRR F R G + D+YIP D
Sbjct: 4 YTRPPN-----TSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLD 44
>AL353135-4|CAI16247.1| 262|Homo sapiens RP11-63L7.3 protein.
Length = 262
Score = 39.9 bits (89), Expect = 0.003
Identities = 22/46 (47%), Positives = 26/46 (56%)
Frame = +3
Query: 114 YGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251
Y RPP SL + N+ T PEDLRR F R G + D+YIP D
Sbjct: 4 YTRPPN-----TSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLD 44
>AF449428-1|AAL57515.1| 261|Homo sapiens SRrp35 protein.
Length = 261
Score = 39.9 bits (89), Expect = 0.003
Identities = 22/46 (47%), Positives = 26/46 (56%)
Frame = +3
Query: 114 YGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251
Y RPP SL + N+ T PEDLRR F R G + D+YIP D
Sbjct: 4 YTRPPN-----TSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLD 44
>U96074-1|AAC78728.1| 320|Homo sapiens translation initiation
factor eIF3 p44 subunit protein.
Length = 320
Score = 37.1 bits (82), Expect = 0.024
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 120 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
+P R D +++V NL+ T DL+ +F G + IY+ +D+T G+
Sbjct: 230 QPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQ 278
>CR457134-1|CAG33415.1| 320|Homo sapiens EIF3S4 protein.
Length = 320
Score = 37.1 bits (82), Expect = 0.024
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 120 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
+P R D +++V NL+ T DL+ +F G + IY+ +D+T G+
Sbjct: 230 QPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQ 278
>BT006889-1|AAP35535.1| 320|Homo sapiens eukaryotic translation
initiation factor 3, subunit 4 delta, 44kDa protein.
Length = 320
Score = 37.1 bits (82), Expect = 0.024
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 120 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
+P R D +++V NL+ T DL+ +F G + IY+ +D+T G+
Sbjct: 230 QPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQ 278
>BC008469-1|AAH08469.1| 320|Homo sapiens eukaryotic translation
initiation factor 3, subunit 4 delta, 44kDa protein.
Length = 320
Score = 37.1 bits (82), Expect = 0.024
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 120 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
+P R D +++V NL+ T DL+ +F G + IY+ +D+T G+
Sbjct: 230 QPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQ 278
>BC000733-1|AAH00733.1| 320|Homo sapiens eukaryotic translation
initiation factor 3, subunit 4 delta, 44kDa protein.
Length = 320
Score = 37.1 bits (82), Expect = 0.024
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 120 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
+P R D +++V NL+ T DL+ +F G + IY+ +D+T G+
Sbjct: 230 QPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQ 278
>AF094850-1|AAG15419.1| 320|Homo sapiens eukaryotic translation
initiation factor 3 subunit p42/p44 protein.
Length = 320
Score = 37.1 bits (82), Expect = 0.024
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 120 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
+P R D +++V NL+ T DL+ +F G + IY+ +D+T G+
Sbjct: 230 QPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQ 278
>AF092453-1|AAG15396.1| 320|Homo sapiens eukaryotic translation
initiation factor 3 subunit p42/p44 protein.
Length = 320
Score = 37.1 bits (82), Expect = 0.024
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 120 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
+P R D +++V NL+ T DL+ +F G + IY+ +D+T G+
Sbjct: 230 QPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQ 278
>AF020833-1|AAB71866.1| 320|Homo sapiens eukaryotic translation
initiation factor 3 subunit protein.
Length = 320
Score = 37.1 bits (82), Expect = 0.024
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 120 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
+P R D +++V NL+ T DL+ +F G + IY+ +D+T G+
Sbjct: 230 QPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQ 278
>CR457272-1|CAG33553.1| 357|Homo sapiens PSPC1 protein.
Length = 357
Score = 36.7 bits (81), Expect = 0.032
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +3
Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263
L V NL T ED +R+FER GE +++I RDR G
Sbjct: 48 LFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFG 84
>BC014184-1|AAH14184.2| 393|Homo sapiens PSPC1 protein protein.
Length = 393
Score = 36.7 bits (81), Expect = 0.032
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +3
Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263
L V NL T ED +R+FER GE +++I RDR G
Sbjct: 84 LFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFG 120
>AL354808-5|CAI41005.1| 248|Homo sapiens paraspeckle component 1
protein.
Length = 248
Score = 36.7 bits (81), Expect = 0.032
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +3
Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263
L V NL T ED +R+FER GE +++I RDR G
Sbjct: 84 LFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFG 120
>AL354808-4|CAI41004.1| 523|Homo sapiens paraspeckle component 1
protein.
Length = 523
Score = 36.7 bits (81), Expect = 0.032
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +3
Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263
L V NL T ED +R+FER GE +++I RDR G
Sbjct: 84 LFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFG 120
>AK001817-1|BAA91924.1| 357|Homo sapiens protein ( Homo sapiens
cDNA FLJ10955 fis, clone PLACE1000406, moderately
similar to PTB-ASSOCIATED SPLICING FACTOR. ).
Length = 357
Score = 36.7 bits (81), Expect = 0.032
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +3
Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263
L V NL T ED +R+FER GE +++I RDR G
Sbjct: 48 LFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFG 84
>AF449627-1|AAL59602.1| 393|Homo sapiens paraspeckle protein 1 beta
isoform protein.
Length = 393
Score = 36.7 bits (81), Expect = 0.032
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +3
Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263
L V NL T ED +R+FER GE +++I RDR G
Sbjct: 84 LFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFG 120
>AF448795-1|AAL59601.1| 523|Homo sapiens paraspeckle protein 1
alpha isoform protein.
Length = 523
Score = 36.7 bits (81), Expect = 0.032
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +3
Query: 153 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263
L V NL T ED +R+FER GE +++I RDR G
Sbjct: 84 LFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFG 120
>BC071575-1|AAH71575.1| 69|Homo sapiens FUSIP1 protein protein.
Length = 69
Score = 35.5 bits (78), Expect = 0.073
Identities = 21/46 (45%), Positives = 25/46 (54%)
Frame = +3
Query: 114 YGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251
Y RPP SL V N+ T EDLRR F R G + D+Y+P D
Sbjct: 4 YLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLD 44
>BC010074-1|AAH10074.1| 173|Homo sapiens FUSIP1 protein protein.
Length = 173
Score = 35.5 bits (78), Expect = 0.073
Identities = 21/46 (45%), Positives = 25/46 (54%)
Frame = +3
Query: 114 YGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251
Y RPP SL V N+ T EDLRR F R G + D+Y+P D
Sbjct: 4 YLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLD 44
>BC005039-1|AAH05039.1| 262|Homo sapiens FUS interacting protein
(serine/arginine-rich) 1 protein.
Length = 262
Score = 35.5 bits (78), Expect = 0.073
Identities = 21/46 (45%), Positives = 25/46 (54%)
Frame = +3
Query: 114 YGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251
Y RPP SL V N+ T EDLRR F R G + D+Y+P D
Sbjct: 4 YLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLD 44
>BC001107-1|AAH01107.1| 183|Homo sapiens FUS interacting protein
(serine/arginine-rich) 1 protein.
Length = 183
Score = 35.5 bits (78), Expect = 0.073
Identities = 21/46 (45%), Positives = 25/46 (54%)
Frame = +3
Query: 114 YGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251
Y RPP SL V N+ T EDLRR F R G + D+Y+P D
Sbjct: 4 YLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLD 44
>AY150181-1|AAN65381.1| 183|Homo sapiens splicing factor SRp38-2
protein.
Length = 183
Score = 35.5 bits (78), Expect = 0.073
Identities = 21/46 (45%), Positives = 25/46 (54%)
Frame = +3
Query: 114 YGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251
Y RPP SL V N+ T EDLRR F R G + D+Y+P D
Sbjct: 4 YLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLD 44
>AY150180-1|AAN65380.1| 262|Homo sapiens splicing factor SRp38
protein.
Length = 262
Score = 35.5 bits (78), Expect = 0.073
Identities = 21/46 (45%), Positives = 25/46 (54%)
Frame = +3
Query: 114 YGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251
Y RPP SL V N+ T EDLRR F R G + D+Y+P D
Sbjct: 4 YLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLD 44
>AY048592-2|AAL06099.1| 262|Homo sapiens TLS-associated SR protein
2 protein.
Length = 262
Score = 35.5 bits (78), Expect = 0.073
Identities = 21/46 (45%), Positives = 25/46 (54%)
Frame = +3
Query: 114 YGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251
Y RPP SL V N+ T EDLRR F R G + D+Y+P D
Sbjct: 4 YLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLD 44
>AY048592-1|AAL06098.1| 183|Homo sapiens TLS-associated SR protein
1 protein.
Length = 183
Score = 35.5 bits (78), Expect = 0.073
Identities = 21/46 (45%), Positives = 25/46 (54%)
Frame = +3
Query: 114 YGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251
Y RPP SL V N+ T EDLRR F R G + D+Y+P D
Sbjct: 4 YLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLD 44
>AL590609-10|CAI14808.1| 262|Homo sapiens FUS interacting protein
(serine/arginine-rich) 1 protein.
Length = 262
Score = 35.5 bits (78), Expect = 0.073
Identities = 21/46 (45%), Positives = 25/46 (54%)
Frame = +3
Query: 114 YGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251
Y RPP SL V N+ T EDLRR F R G + D+Y+P D
Sbjct: 4 YLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLD 44
>AL590609-9|CAI14807.1| 261|Homo sapiens FUS interacting protein
(serine/arginine-rich) 1 protein.
Length = 261
Score = 35.5 bits (78), Expect = 0.073
Identities = 21/46 (45%), Positives = 25/46 (54%)
Frame = +3
Query: 114 YGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251
Y RPP SL V N+ T EDLRR F R G + D+Y+P D
Sbjct: 4 YLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLD 44
>AL590609-8|CAI14805.1| 173|Homo sapiens FUS interacting protein
(serine/arginine-rich) 1 protein.
Length = 173
Score = 35.5 bits (78), Expect = 0.073
Identities = 21/46 (45%), Positives = 25/46 (54%)
Frame = +3
Query: 114 YGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251
Y RPP SL V N+ T EDLRR F R G + D+Y+P D
Sbjct: 4 YLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLD 44
>AL590609-7|CAI14806.1| 172|Homo sapiens FUS interacting protein
(serine/arginine-rich) 1 protein.
Length = 172
Score = 35.5 bits (78), Expect = 0.073
Identities = 21/46 (45%), Positives = 25/46 (54%)
Frame = +3
Query: 114 YGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251
Y RPP SL V N+ T EDLRR F R G + D+Y+P D
Sbjct: 4 YLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLD 44
>AL590609-6|CAI14803.1| 183|Homo sapiens FUS interacting protein
(serine/arginine-rich) 1 protein.
Length = 183
Score = 35.5 bits (78), Expect = 0.073
Identities = 21/46 (45%), Positives = 25/46 (54%)
Frame = +3
Query: 114 YGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251
Y RPP SL V N+ T EDLRR F R G + D+Y+P D
Sbjct: 4 YLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLD 44
>AL590609-5|CAI14804.1| 182|Homo sapiens FUS interacting protein
(serine/arginine-rich) 1 protein.
Length = 182
Score = 35.5 bits (78), Expect = 0.073
Identities = 21/46 (45%), Positives = 25/46 (54%)
Frame = +3
Query: 114 YGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251
Y RPP SL V N+ T EDLRR F R G + D+Y+P D
Sbjct: 4 YLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLD 44
>AK222994-1|BAD96714.1| 262|Homo sapiens FUS interacting protein
(serine-arginine rich) 1 isoform 2 variant protein.
Length = 262
Score = 35.5 bits (78), Expect = 0.073
Identities = 21/46 (45%), Positives = 25/46 (54%)
Frame = +3
Query: 114 YGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251
Y RPP SL V N+ T EDLRR F R G + D+Y+P D
Sbjct: 4 YLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLD 44
>AK001286-1|BAA91601.1| 183|Homo sapiens protein ( Homo sapiens
cDNA FLJ10424 fis, clone NT2RP1000272, highly similar to
Homo sapiens TLS-associated protein TASR-2 mRNA. ).
Length = 183
Score = 35.5 bits (78), Expect = 0.073
Identities = 21/46 (45%), Positives = 25/46 (54%)
Frame = +3
Query: 114 YGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251
Y RPP SL V N+ T EDLRR F R G + D+Y+P D
Sbjct: 4 YLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLD 44
>AF449427-1|AAL57514.1| 262|Homo sapiens SRrp40 protein.
Length = 262
Score = 35.5 bits (78), Expect = 0.073
Identities = 21/46 (45%), Positives = 25/46 (54%)
Frame = +3
Query: 114 YGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251
Y RPP SL V N+ T EDLRR F R G + D+Y+P D
Sbjct: 4 YLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLD 44
>AF419332-1|AAL16666.1| 261|Homo sapiens TLS-associated protein
TASR-2 protein.
Length = 261
Score = 35.5 bits (78), Expect = 0.073
Identities = 21/46 (45%), Positives = 25/46 (54%)
Frame = +3
Query: 114 YGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251
Y RPP SL V N+ T EDLRR F R G + D+Y+P D
Sbjct: 4 YLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLD 44
>AF419331-1|AAL16665.1| 183|Homo sapiens TLS-associated protein
TASR-1 protein.
Length = 183
Score = 35.5 bits (78), Expect = 0.073
Identities = 21/46 (45%), Positives = 25/46 (54%)
Frame = +3
Query: 114 YGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251
Y RPP SL V N+ T EDLRR F R G + D+Y+P D
Sbjct: 4 YLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLD 44
>AF067730-1|AAC26727.1| 262|Homo sapiens TLS-associated protein
TASR-2 protein.
Length = 262
Score = 35.5 bits (78), Expect = 0.073
Identities = 21/46 (45%), Positives = 25/46 (54%)
Frame = +3
Query: 114 YGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251
Y RPP SL V N+ T EDLRR F R G + D+Y+P D
Sbjct: 4 YLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLD 44
>AF047448-1|AAC70918.1| 183|Homo sapiens TLS-associated protein
TASR protein.
Length = 183
Score = 35.5 bits (78), Expect = 0.073
Identities = 21/46 (45%), Positives = 25/46 (54%)
Frame = +3
Query: 114 YGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 251
Y RPP SL V N+ T EDLRR F R G + D+Y+P D
Sbjct: 4 YLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLD 44
>AL450998-14|CAH70862.1| 296|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 296
Score = 31.9 bits (69), Expect = 0.90
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPR 248
+L + NL TT DLR +F+R GE+ DI I +
Sbjct: 178 TLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKK 210
>AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 3664
Score = 31.9 bits (69), Expect = 0.90
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPR 248
+L + NL TT DLR +F+R GE+ DI I +
Sbjct: 439 TLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKK 471
>AL096858-1|CAB51072.1| 3261|Homo sapiens hypothetical protein
protein.
Length = 3261
Score = 31.9 bits (69), Expect = 0.90
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPR 248
+L + NL TT DLR +F+R GE+ DI I +
Sbjct: 36 TLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKK 68
>AL034555-6|CAI19528.1| 296|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 296
Score = 31.9 bits (69), Expect = 0.90
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPR 248
+L + NL TT DLR +F+R GE+ DI I +
Sbjct: 178 TLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKK 210
>AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 3664
Score = 31.9 bits (69), Expect = 0.90
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPR 248
+L + NL TT DLR +F+R GE+ DI I +
Sbjct: 439 TLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKK 471
>AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor
transcription cofactor protein.
Length = 3664
Score = 31.9 bits (69), Expect = 0.90
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 150 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPR 248
+L + NL TT DLR +F+R GE+ DI I +
Sbjct: 439 TLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKK 471
>BC012062-1|AAH12062.1| 407|Homo sapiens DAZ associated protein 1
protein.
Length = 407
Score = 31.5 bits (68), Expect = 1.2
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +3
Query: 138 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRT 257
D + L V L + TT E LR F + GEV D I +D+T
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKT 46
>AY678451-1|AAV97647.1| 454|Homo sapiens DAZAP1/MEF2D fusion
protein protein.
Length = 454
Score = 31.5 bits (68), Expect = 1.2
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +3
Query: 138 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRT 257
D + L V L + TT E LR F + GEV D I +D+T
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKT 46
>AY547318-1|AAS55633.1| 236|Homo sapiens unknown protein.
Length = 236
Score = 31.5 bits (68), Expect = 1.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
V L Y TT LR+ FE GE+ + + DR GK
Sbjct: 15 VGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGK 50
>AL136305-1|CAC36889.1| 236|Homo sapiens protein ( Human DNA
sequence from clone RP1-259A10 on chromosome 6p22.1-23
Contains the gene for an ssDNA binding protein and a CpG
island. ).
Length = 236
Score = 31.5 bits (68), Expect = 1.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
V L Y TT LR+ FE GE+ + + DR GK
Sbjct: 15 VGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGK 50
>AK095016-1|BAC04474.1| 211|Homo sapiens protein ( Homo sapiens
cDNA FLJ37697 fis, clone BRHIP2015360, highly similar to
Xenopus laevis RRM-containing protein SEB-4 mRNA. ).
Length = 211
Score = 31.5 bits (68), Expect = 1.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
V L Y TT LR+ FE GE+ + + DR GK
Sbjct: 15 VGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGK 50
>AF181719-1|AAF78364.1| 407|Homo sapiens DAZ associated protein 1
protein.
Length = 407
Score = 31.5 bits (68), Expect = 1.2
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +3
Query: 138 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRT 257
D + L V L + TT E LR F + GEV D I +D+T
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKT 46
>BC013889-1|AAH13889.1| 759|Homo sapiens RNA binding motif protein
28 protein.
Length = 759
Score = 30.7 bits (66), Expect = 2.1
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +3
Query: 138 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGKV 269
D L + NL+++ + +DL+ VF + G V ++ IPR + GK+
Sbjct: 111 DKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPR-KPDGKM 153
>AK222716-1|BAD96436.1| 759|Homo sapiens RNA binding motif protein
28 variant protein.
Length = 759
Score = 30.7 bits (66), Expect = 2.1
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +3
Query: 138 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGKV 269
D L + NL+++ + +DL+ VF + G V ++ IPR + GK+
Sbjct: 111 DKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPR-KPDGKM 153
>AK001239-1|BAA91575.1| 759|Homo sapiens protein ( Homo sapiens
cDNA FLJ10377 fis, clone NT2RM2001989, weakly similar to
NUCLEOLAR PROTEIN NOP4. ).
Length = 759
Score = 30.7 bits (66), Expect = 2.1
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +3
Query: 138 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGKV 269
D L + NL+++ + +DL+ VF + G V ++ IPR + GK+
Sbjct: 111 DKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPR-KPDGKM 153
>U38175-1|AAB41913.1| 326|Homo sapiens HuR RNA binding protein
protein.
Length = 326
Score = 30.3 bits (65), Expect = 2.7
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3
Query: 102 LKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263
+K+SY RP + +L + L T +D+ +F R G + + + D+T G
Sbjct: 91 IKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTG 144
Score = 29.5 bits (63), Expect = 4.8
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +3
Query: 141 GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGKVEDSPS*GFSSVVTLK 314
G +L V+ L T ++LR +F GEV + RD+ G S GF + VT K
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAG---HSLGYGFVNYVTAK 72
>BT009793-1|AAP88795.1| 326|Homo sapiens ELAV (embryonic lethal,
abnormal vision, Drosophila)-like 1 (Hu antigen R)
protein.
Length = 326
Score = 30.3 bits (65), Expect = 2.7
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3
Query: 102 LKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263
+K+SY RP + +L + L T +D+ +F R G + + + D+T G
Sbjct: 91 IKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTG 144
Score = 29.5 bits (63), Expect = 4.8
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +3
Query: 141 GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGKVEDSPS*GFSSVVTLK 314
G +L V+ L T ++LR +F GEV + RD+ G S GF + VT K
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAG---HSLGYGFVNYVTAK 72
>BC130001-1|AAI30002.1| 255|Homo sapiens LOC390748 protein protein.
Length = 255
Score = 30.3 bits (65), Expect = 2.7
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 117 GRPPPRIDG-MVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263
G P +++ S+ V N+ Y + E+L F RCGEV + I D+ G
Sbjct: 136 GTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSG 185
>BC003376-1|AAH03376.1| 326|Homo sapiens ELAV (embryonic lethal,
abnormal vision, Drosophila)-like 1 (Hu antigen R)
protein.
Length = 326
Score = 30.3 bits (65), Expect = 2.7
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3
Query: 102 LKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 263
+K+SY RP + +L + L T +D+ +F R G + + + D+T G
Sbjct: 91 IKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTG 144
Score = 29.5 bits (63), Expect = 4.8
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +3
Query: 141 GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGKVEDSPS*GFSSVVTLK 314
G +L V+ L T ++LR +F GEV + RD+ G S GF + VT K
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAG---HSLGYGFVNYVTAK 72
>AC003982-3|AAB95636.1| 362|Homo sapiens WUGSC:H_166H1.2 protein.
Length = 362
Score = 30.3 bits (65), Expect = 2.7
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 126 PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
P + + V L+ TT ED+++ FE+ G+V D + D+T +
Sbjct: 102 PKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNR 148
>AB073212-1|BAB70469.1| 179|Homo sapiens Musashi1 protein.
Length = 179
Score = 30.3 bits (65), Expect = 2.7
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 126 PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
P + + V L+ TT ED+++ FE+ G+V D + D+T +
Sbjct: 36 PKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNR 82
>AB072592-1|BAB69769.1| 181|Homo sapiens Musashi1 protein.
Length = 181
Score = 30.3 bits (65), Expect = 2.7
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 126 PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
P + + V L+ TT ED+++ FE+ G+V D + D+T +
Sbjct: 39 PKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNR 85
>AB072591-1|BAB69768.1| 181|Homo sapiens Musashi1 protein.
Length = 181
Score = 30.3 bits (65), Expect = 2.7
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 126 PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
P + + V L+ TT ED+++ FE+ G+V D + D+T +
Sbjct: 39 PKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNR 85
>AB072590-1|BAB69767.1| 180|Homo sapiens Musashi1 protein.
Length = 180
Score = 30.3 bits (65), Expect = 2.7
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 126 PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
P + + V L+ TT ED+++ FE+ G+V D + D+T +
Sbjct: 39 PKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNR 85
>AB012851-1|BAA33962.1| 362|Homo sapiens Musashi protein.
Length = 362
Score = 30.3 bits (65), Expect = 2.7
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 126 PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 266
P + + V L+ TT ED+++ FE+ G+V D + D+T +
Sbjct: 102 PKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNR 148
>BC001526-1|AAH01526.1| 328|Homo sapiens musashi homolog 2
(Drosophila) protein.
Length = 328
Score = 29.9 bits (64), Expect = 3.6
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRT 257
+ L+++T+P+ LR F + GE+ + + RD T
Sbjct: 25 IGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPT 57
>AK093888-1|BAC04244.1| 251|Homo sapiens protein ( Homo sapiens
cDNA FLJ36569 fis, clone TRACH2010824, highly similar to
Ribonucleoprotein. ).
Length = 251
Score = 29.9 bits (64), Expect = 3.6
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 159 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRT 257
+ L+++T+P+ LR F + GE+ + + RD T
Sbjct: 21 IGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPT 53
>AJ405692-1|CAC03805.1| 63|Homo sapiens T-cell receptor beta chain
protein.
Length = 63
Score = 29.1 bits (62), Expect = 6.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 337 SVHRVQGFFSVTTLEKPXEGESSTFPCVRSLGM 239
S R +G FS +++ +G+S+ + C SLG+
Sbjct: 23 SAERPKGSFSTLEIQRTEQGDSAMYLCASSLGL 55
>AF009786-1|AAB63916.1| 107|Homo sapiens T cell receptor beta chain
protein.
Length = 107
Score = 29.1 bits (62), Expect = 6.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 337 SVHRVQGFFSVTTLEKPXEGESSTFPCVRSLG 242
S R +G FS +++ +G+S+ + C SLG
Sbjct: 42 SAERAKGSFSTLEIQRTEQGDSAMYLCASSLG 73
>U63289-1|AAC50895.1| 482|Homo sapiens CUG-BP/hNab50 protein.
Length = 482
Score = 28.7 bits (61), Expect = 8.4
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 129 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQ 260
P +D + + V + + +DLR +FE+ G V +I + RDR+Q
Sbjct: 11 PDLDA-IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQ 53
>BC031079-1|AAH31079.1| 483|Homo sapiens CUG triplet repeat, RNA
binding protein 1 protein.
Length = 483
Score = 28.7 bits (61), Expect = 8.4
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 129 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQ 260
P +D + + V + + +DLR +FE+ G V +I + RDR+Q
Sbjct: 11 PDLDA-IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQ 53
>AJ405859-1|CAC03972.1| 66|Homo sapiens T-cell receptor beta chain
protein.
Length = 66
Score = 28.7 bits (61), Expect = 8.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 337 SVHRVQGFFSVTTLEKPXEGESSTFPCVRSLGM 239
S R +G FS +++ +G+S+ + C SLG+
Sbjct: 27 SAERPKGSFSTLEIQRTEQGDSAMYLCASSLGV 59
>AJ405825-1|CAC03938.1| 65|Homo sapiens T-cell receptor beta chain
protein.
Length = 65
Score = 28.7 bits (61), Expect = 8.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 337 SVHRVQGFFSVTTLEKPXEGESSTFPCVRSLGM 239
S R +G FS +++ +G+S+ + C SLG+
Sbjct: 26 SAERPKGSFSTLEIQRTEQGDSAMYLCASSLGV 58
>AJ007988-1|CAC20566.1| 486|Homo sapiens deadenylation factor
CUG-BP protein.
Length = 486
Score = 28.7 bits (61), Expect = 8.4
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 129 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQ 260
P +D + + V + + +DLR +FE+ G V +I + RDR+Q
Sbjct: 11 PDLDA-IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQ 53
>AF267534-1|AAF78956.1| 483|Homo sapiens CUG-binding protein A
isoform protein.
Length = 483
Score = 28.7 bits (61), Expect = 8.4
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 129 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQ 260
P +D + + V + + +DLR +FE+ G V +I + RDR+Q
Sbjct: 11 PDLDA-IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQ 53
>AF267533-1|AAF78955.1| 486|Homo sapiens CUG-binding protein LYLQ
isoform protein.
Length = 486
Score = 28.7 bits (61), Expect = 8.4
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 129 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQ 260
P +D + + V + + +DLR +FE+ G V +I + RDR+Q
Sbjct: 11 PDLDA-IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQ 53
>AF248648-1|AAF86230.1| 486|Homo sapiens RNA-binding protein
BRUNOL2 protein.
Length = 486
Score = 28.7 bits (61), Expect = 8.4
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 129 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQ 260
P +D + + V + + +DLR +FE+ G V +I + RDR+Q
Sbjct: 11 PDLDA-IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQ 53
>AB210019-1|BAE06101.1| 544|Homo sapiens CUGBP1 variant protein
protein.
Length = 544
Score = 28.7 bits (61), Expect = 8.4
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 129 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQ 260
P +D + + V + + +DLR +FE+ G V +I + RDR+Q
Sbjct: 70 PDLDA-IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQ 112
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,349,924
Number of Sequences: 237096
Number of extensions: 963982
Number of successful extensions: 2170
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 1982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2165
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3202085264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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